Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KD735_RS22105 Genome accession   NZ_CP073624
Coordinates   4499592..4500128 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain AW1.7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4494592..4505128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KD735_RS22085 (KD735_21890) soxR 4496320..4496784 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  KD735_RS22090 (KD735_21895) soxS 4496870..4497193 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  KD735_RS22095 (KD735_21900) pdeC 4497196..4498782 (-) 1587 WP_001548920.1 c-di-GMP phosphodiesterase PdeC -
  KD735_RS22100 (KD735_21905) yjcB 4499212..4499493 (+) 282 WP_001295689.1 YjcB family protein -
  KD735_RS22105 (KD735_21910) ssb 4499592..4500128 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KD735_RS22110 (KD735_21915) uvrA 4500382..4503204 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  KD735_RS22115 (KD735_21920) yjbR 4503239..4503595 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  KD735_RS22120 (KD735_21925) yjbQ 4503599..4504015 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KD735_RS22125 (KD735_21930) aphA 4504126..4504839 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=487541 KD735_RS22105 WP_000168305.1 4499592..4500128(-) (ssb) [Escherichia coli strain AW1.7]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=487541 KD735_RS22105 WP_000168305.1 4499592..4500128(-) (ssb) [Escherichia coli strain AW1.7]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489