Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   IF782_RS05555 Genome accession   NZ_CP062312
Coordinates   1102039..1103025 (-) Length   328 a.a.
NCBI ID   WP_000959284.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_163     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1097039..1108025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF782_RS05530 (IF782_05535) - 1097299..1097646 (-) 348 WP_001242102.1 hypothetical protein -
  IF782_RS05535 (IF782_05540) - 1097832..1098425 (+) 594 WP_000224622.1 CYTH domain-containing protein -
  IF782_RS05540 (IF782_05545) - 1098529..1098894 (+) 366 WP_000214068.1 truncated hemoglobin YjbI -
  IF782_RS05545 (IF782_05550) yjbH 1098917..1099723 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  IF782_RS05550 (IF782_05555) pepF 1100183..1101991 (-) 1809 WP_000082730.1 oligoendopeptidase F -
  IF782_RS05555 (IF782_05560) coiA 1102039..1103025 (-) 987 WP_000959284.1 competence protein CoiA family protein Machinery gene
  IF782_RS05560 (IF782_05565) mecA 1103146..1103865 (-) 720 WP_001217728.1 adaptor protein MecA -
  IF782_RS05565 (IF782_05570) spxA 1104236..1104631 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  IF782_RS05570 (IF782_05575) trpS 1104927..1105916 (+) 990 WP_000448941.1 tryptophan--tRNA ligase -
  IF782_RS05575 (IF782_05580) opp4C 1105958..1106839 (-) 882 WP_031918645.1 oligopeptide ABC transporter permease -
  IF782_RS05580 (IF782_05585) opp4B 1106851..1107813 (-) 963 WP_000239819.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38810.39 Da        Isoelectric Point: 9.5881

>NTDB_id=487542 IF782_RS05555 WP_000959284.1 1102039..1103025(-) (coiA) [Staphylococcus aureus strain NAS_OP_163]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=487542 IF782_RS05555 WP_000959284.1 1102039..1103025(-) (coiA) [Staphylococcus aureus strain NAS_OP_163]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTATTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTACACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982