Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KD154_RS13415 Genome accession   NZ_CP073589
Coordinates   2734132..2734599 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain MFDS1006657     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2729132..2739599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KD154_RS13370 rplP 2729242..2729652 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  KD154_RS13375 rpsC 2729665..2730366 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  KD154_RS13380 rplV 2730384..2730716 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  KD154_RS13385 rpsS 2730731..2731009 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  KD154_RS13390 rplB 2731026..2731847 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  KD154_RS13395 rplW 2731865..2732167 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  KD154_RS13400 rplD 2732164..2732769 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  KD154_RS13405 rplC 2732780..2733409 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  KD154_RS13410 rpsJ 2733442..2733753 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  KD154_RS13415 pilD 2734132..2734599 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  KD154_RS13420 bfr 2734596..2735072 (-) 477 WP_000675515.1 bacterioferritin -
  KD154_RS13425 bfd 2735145..2735339 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  KD154_RS13430 tuf 2735522..2736706 (-) 1185 WP_000031783.1 elongation factor Tu -
  KD154_RS13435 fusA 2736777..2738891 (-) 2115 WP_000124700.1 elongation factor G -
  KD154_RS13440 rpsG 2738988..2739458 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=487352 KD154_RS13415 WP_000339836.1 2734132..2734599(+) (pilD) [Escherichia coli strain MFDS1006657]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=487352 KD154_RS13415 WP_000339836.1 2734132..2734599(+) (pilD) [Escherichia coli strain MFDS1006657]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361