Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KCG54_RS10150 Genome accession   NZ_CP073115
Coordinates   2112210..2112497 (-) Length   95 a.a.
NCBI ID   WP_036472233.1    Uniprot ID   A0A4D7WS56
Organism   Neisseria subflava strain TT0077     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2107210..2117497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS10130 (KCG54_10155) - 2107476..2107739 (-) 264 WP_049332348.1 PAAR domain-containing protein -
  KCG54_RS10135 (KCG54_10160) - 2107786..2108931 (-) 1146 WP_254324103.1 hypothetical protein -
  KCG54_RS10140 (KCG54_10165) uvrB 2109281..2111308 (-) 2028 WP_254324104.1 excinuclease ABC subunit UvrB Machinery gene
  KCG54_RS10145 (KCG54_10170) comP 2111530..2112024 (-) 495 WP_254324105.1 type IV pilin protein Machinery gene
  KCG54_RS10150 (KCG54_10175) comE 2112210..2112497 (-) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9763.42 Da        Isoelectric Point: 10.4923

>NTDB_id=486883 KCG54_RS10150 WP_036472233.1 2112210..2112497(-) (comE) [Neisseria subflava strain TT0077]
MKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=486883 KCG54_RS10150 WP_036472233.1 2112210..2112497(-) (comE) [Neisseria subflava strain TT0077]
ATGAAGAAATTTTTATTTGGTGCATTTGCCGCTGTTTGTGCAGCATTCTCTTTGGCCGCCGTGAACATCAATACCGCATC
TTCTGCCGAACTGGAGGCCTTGCCGGGTATCGGCCCGGCTAAGGCGAAATCGATTGTAGAATACCGCCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATTGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCTGCCCAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WS56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

85.263

0.463
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4