Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   KCG54_RS10145 Genome accession   NZ_CP073115
Coordinates   2111530..2112024 (-) Length   164 a.a.
NCBI ID   WP_254324105.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0077     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2106530..2117024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS10130 (KCG54_10155) - 2107476..2107739 (-) 264 WP_049332348.1 PAAR domain-containing protein -
  KCG54_RS10135 (KCG54_10160) - 2107786..2108931 (-) 1146 WP_254324103.1 hypothetical protein -
  KCG54_RS10140 (KCG54_10165) uvrB 2109281..2111308 (-) 2028 WP_254324104.1 excinuclease ABC subunit UvrB Machinery gene
  KCG54_RS10145 (KCG54_10170) comP 2111530..2112024 (-) 495 WP_254324105.1 type IV pilin protein Machinery gene
  KCG54_RS10150 (KCG54_10175) comE 2112210..2112497 (-) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18233.35 Da        Isoelectric Point: 10.1969

>NTDB_id=486882 KCG54_RS10145 WP_254324105.1 2111530..2112024(-) (comP) [Neisseria subflava strain TT0077]
MYLKAFDRKRDRATVQRGYSLIQLLVVMLLVSILATAAFTVYRESVRSANLRAAHAALLENARFMEQFYTKKGSFKLTST
KWPELPVKEAGGFCIRMSGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFRGNDAECK
PFMG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=486882 KCG54_RS10145 WP_254324105.1 2111530..2112024(-) (comP) [Neisseria subflava strain TT0077]
ATGTACTTAAAAGCATTTGACAGAAAACGGGATAGGGCAACTGTGCAGAGGGGCTACTCCTTGATACAGCTGCTGGTGGT
GATGCTGCTGGTTTCGATCTTGGCGACGGCGGCCTTTACGGTCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGG
CTCATGCCGCACTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATACGAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAATTGCCGGTGAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGCCAGGCTAAGGGTATCCTGGAGGG
TAAGTTTACCTTGAAGGCGGTGGCGCTGGACAGGGAGGCGGAGCCGAGGGTGCTGCGCTTGAATGAGTCGCTGACGGCGG
TGGTGTGCGGGAAGATGAAGGGGAAGGGCAGTTGTACGGACGGTGAGGAGATATTTAGGGGCAATGATGCGGAGTGTAAG
CCTTTTATGGGGTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(42-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

97.561

100

0.976
  comP Neisseria meningitidis 8013

50.336

90.854

0.457
  comP Neisseria gonorrhoeae MS11

50.34

89.634

0.451