Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IHE33_RS11170 Genome accession   NZ_CP062168
Coordinates   2519249..2520781 (+) Length   510 a.a.
NCBI ID   WP_338925880.1    Uniprot ID   -
Organism   Mycetohabitans endofungorum strain B60     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2514249..2525781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHE33_RS11150 (IHE33_11000) gshA 2514948..2516237 (-) 1290 WP_338925878.1 glutamate--cysteine ligase -
  IHE33_RS11155 (IHE33_11005) - 2516615..2518135 (-) 1521 WP_338925879.1 ammonium transporter -
  IHE33_RS11160 (IHE33_11010) - 2518207..2518545 (-) 339 WP_076786004.1 P-II family nitrogen regulator -
  IHE33_RS11165 (IHE33_11015) - 2518937..2519194 (+) 258 WP_104076536.1 accessory factor UbiK family protein -
  IHE33_RS11170 (IHE33_11020) comM 2519249..2520781 (+) 1533 WP_338925880.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IHE33_RS11175 (IHE33_11025) - 2521215..2521676 (-) 462 WP_323073017.1 hypothetical protein -
  IHE33_RS11180 (IHE33_11030) - 2521962..2522477 (+) 516 WP_338926988.1 TlpA disulfide reductase family protein -
  IHE33_RS11185 (IHE33_11035) lipA 2522569..2523582 (-) 1014 WP_323073018.1 lipoyl synthase -
  IHE33_RS11190 (IHE33_11040) lipB 2523617..2524315 (-) 699 WP_338926989.1 lipoyl(octanoyl) transferase LipB -
  IHE33_RS11195 (IHE33_11045) - 2524418..2524744 (-) 327 WP_338925881.1 DUF2917 domain-containing protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54011.20 Da        Isoelectric Point: 8.1045

>NTDB_id=486752 IHE33_RS11170 WP_338925880.1 2519249..2520781(+) (comM) [Mycetohabitans endofungorum strain B60]
MSLAVVRSRAPLHALAPEVTVEVHLANGLPSFAIVGLPDLEVRESRERVRAALAHCGFDVPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQLPCNALTGREFAGELSLSGTLRPVRGAFAMACGTARQAGPDAACPELYVPLDNAAEAALAPGVAV
YGAADLATLVAHLKGEPKARIERAQPSGVALPAQPTPDMADVIGQPAARRALEIAAAGSHHMLMVGPPGAGKSMLAQRLP
GILPPMSDDDALAYAMLLSASGRGFTAADWRRRPFRAPHHSASATALVGGYNPPRPGEITLAHLGVLFLDELPEFSRAVL
ETLREPLETGKITISRAAAQTDFPAACQLVAAMNPCPCGLRGDPLGRCRCTPDQIARYVGRLSGPLLDRIDIVIDVPSLS
AAELARRTGARGEASHVVAARVRHARERQLARQHKANCALNAEDLSRWCPLDPRSEALLQICGERLGWSGRAFDKVRRVA
RTIADLDLSDDVLAVHVGEAVQYRRASITL

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=486752 IHE33_RS11170 WP_338925880.1 2519249..2520781(+) (comM) [Mycetohabitans endofungorum strain B60]
ATGTCGCTAGCCGTGGTCCGCAGCCGCGCGCCGTTGCACGCGCTCGCGCCCGAAGTCACTGTCGAAGTCCATTTGGCGAA
CGGCCTGCCGTCGTTTGCGATCGTCGGGCTGCCTGACCTGGAAGTGCGTGAGAGCCGGGAACGGGTGCGGGCCGCATTGG
CCCATTGCGGTTTCGACGTGCCCGTGCGGCGAATCACCGTCAATCTGGCCCCGGCGGACTTACCGAAGGAATCCGGGCGC
TTCGATTTGCCGATCGCACTGGGCATCCTGGCCGCGAGCGGGCAATTGCCGTGCAATGCACTGACCGGCCGCGAGTTCGC
CGGCGAATTGTCGCTCAGCGGCACGCTGCGGCCGGTCCGGGGTGCGTTCGCGATGGCGTGCGGCACCGCGAGACAGGCTG
GTCCCGACGCGGCGTGCCCGGAACTGTACGTGCCGTTGGACAATGCGGCGGAGGCCGCGCTGGCGCCAGGCGTGGCCGTG
TACGGAGCTGCCGACCTGGCCACGCTCGTCGCGCATTTGAAAGGCGAGCCCAAGGCTCGCATCGAGCGCGCGCAGCCGAG
CGGCGTCGCCCTACCCGCACAACCCACACCGGATATGGCCGATGTGATCGGCCAACCTGCCGCGCGCCGGGCGCTGGAGA
TCGCTGCCGCCGGCTCGCATCACATGTTGATGGTGGGACCGCCCGGCGCCGGCAAGTCGATGCTGGCGCAACGTCTGCCG
GGCATACTGCCACCGATGTCGGACGACGACGCGCTGGCCTATGCAATGCTGCTGTCCGCCAGCGGCCGTGGCTTCACGGC
GGCAGACTGGCGGCGCCGTCCGTTTCGCGCGCCGCATCATAGTGCGAGCGCCACCGCGCTGGTCGGCGGCTACAACCCGC
CGCGGCCCGGCGAAATCACACTAGCGCACCTGGGCGTACTGTTCCTCGATGAGCTGCCCGAGTTCAGCCGCGCGGTGCTG
GAGACCCTTCGGGAGCCGCTCGAAACGGGCAAGATCACGATTTCTCGGGCGGCTGCGCAAACCGACTTTCCCGCCGCATG
TCAACTGGTTGCCGCGATGAACCCGTGCCCTTGCGGCTTGCGCGGCGATCCGCTAGGACGGTGCCGATGCACGCCCGACC
AGATCGCCCGCTATGTCGGCAGGCTGTCTGGACCGTTGCTCGATCGGATCGACATTGTCATCGACGTGCCTTCGCTGTCG
GCCGCCGAGCTTGCCCGCCGCACCGGCGCGCGCGGCGAAGCGAGCCACGTGGTCGCGGCGCGTGTGCGGCACGCGCGCGA
ACGTCAATTGGCACGCCAGCATAAGGCCAATTGCGCGTTGAATGCCGAGGACCTCAGCCGCTGGTGCCCACTCGATCCGC
GCAGCGAAGCGTTACTGCAAATCTGCGGCGAGCGCCTGGGGTGGTCGGGACGTGCCTTCGACAAGGTGCGCCGCGTTGCG
CGCACCATCGCCGATCTTGATCTGAGCGATGACGTGCTCGCTGTCCACGTCGGCGAGGCGGTGCAATACCGGCGCGCGTC
GATCACGCTCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.703

99.02

0.492
  comM Haemophilus influenzae Rd KW20

48.814

99.216

0.484
  comM Vibrio campbellii strain DS40M4

48.016

98.824

0.475
  comM Glaesserella parasuis strain SC1401

47.14

99.412

0.469
  comM Legionella pneumophila str. Paris

45.652

99.216

0.453
  comM Legionella pneumophila strain ERS1305867

45.652

99.216

0.453
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.165

97.647

0.402