Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IGX38_RS02625 Genome accession   NZ_CP062162
Coordinates   577599..579095 (-) Length   498 a.a.
NCBI ID   WP_186416573.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain 2020WEIHUA_G     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 572599..584095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGX38_RS02615 (IGX38_02605) - 573819..575456 (+) 1638 WP_017246172.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  IGX38_RS02620 (IGX38_02610) - 575496..577469 (-) 1974 WP_011911733.1 BCCT family transporter -
  IGX38_RS02625 (IGX38_02615) comM 577599..579095 (-) 1497 WP_186416573.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IGX38_RS02630 (IGX38_02620) - 579132..579392 (-) 261 WP_013981620.1 accessory factor UbiK family protein -
  IGX38_RS02635 (IGX38_02625) glnK 579789..580127 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  IGX38_RS02640 (IGX38_02630) - 580166..581482 (+) 1317 WP_011911736.1 ammonium transporter -
  IGX38_RS02645 (IGX38_02635) - 581599..582849 (+) 1251 WP_186416574.1 ammonium transporter -
  IGX38_RS02650 (IGX38_02640) - 582951..583376 (+) 426 WP_011911738.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  IGX38_RS02655 (IGX38_02645) sutA 583454..583783 (+) 330 WP_011911739.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53127.05 Da        Isoelectric Point: 7.7464

>NTDB_id=486604 IGX38_RS02625 WP_186416573.1 577599..579095(-) (comM) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
MSLAIVHSRAQIGIEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGERLEQLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVFAAEHL
LEVAAHFNGVTPLEPYVAQGLLRQVQPYPDLADVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIHSVASHSPLQHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPNGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNAAPQT
GQSSAVLAAQVAEARRLQLARQGCANAFLDLVGLREHCQLTAEDQAWLERACERLALSLRAAHRLLKVARTLADLEQAER
IGRQHLAEALQYRPGSQA

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=486604 IGX38_RS02625 WP_186416573.1 577599..579095(-) (comM) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
ATGTCCCTGGCCATCGTCCATAGCCGCGCTCAGATCGGCATCGAAGCCCCGGCGGTGACCGTCGAGGCGCATCTGGCCAA
CGGCCTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAACCGCCGTCAAGGAGAGCAAGGACCGGGTGCGCAGCGCCATCC
TGACCTCCGGTTTCGATTTCCCCGCCCGACGCATCACACTCAATCTCGCCCCTGCCGATCTGCCCAAGGACGGTGGTCGC
TTCGACCTGGCCATCGCGCTGGGCATCCTGGCCGCCAGCGGACAGCTGCCCGGCGAACGTCTGGAGCAGTTGGAATGCCT
GGGCGAACTGGCGTTGTCCGGCGCCTTGCGCCCGGTCCAGGGCGTGCTGCCTGCCGCCCTTGCCGCGCGTGCCGCCGGCC
GTGCGCTGCTGGTGCCGCGAGCCAATGCCGAGGAGGCCAGCCTCGCCTCGGGCCTGACCGTGTTTGCCGCCGAGCATCTG
CTGGAAGTTGCCGCCCACTTCAACGGCGTTACCCCGCTCGAGCCCTACGTGGCCCAGGGGCTGCTGCGGCAGGTCCAGCC
CTACCCCGACCTGGCCGACGTACAGGGCCAGCAGGCGGCCAAACGCGGCCTGCTGATCGCCGCGGCCGGCGCACACAACC
TGCTGTTCTCCGGACCGCCCGGCACCGGCAAGACGCTATTGGCCAGCCGTCTGCCCGGCCTGCTGCCGCCGCTGGATGAG
CAGGAGGCGCTGGAAGTGGCCGCGATTCATTCGGTGGCCAGCCACAGCCCGCTGCAGCACTGGCCGCAGCGCCCGTTCCG
CCAGCCCCATCACAGTGCATCGGGCCCGGCACTGGTGGGTGGCGGCAGCCGGCCGCAACCGGGCGAGATCACCCTGGCGC
ATCAGGGTGTGCTGTTTCTCGACGAGCTACCGGAGTTCGACCGCAAGGTGCTGGAGGTGCTGCGCGAGCCACTGGAATCG
GGCCATATCGTCATCGCCCGGGCGCGGGACAAGGTGCGTTTTCCGGCGCGTTTCCAGCTGGTGGCGGCAATGAACCCCTG
CCCGTGCGGCTATCTGGGCGACCCTAACGGTCGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTACCGCAACAAGCTCT
CCGGACCGCTGCTCGACCGCATCGACCTGCATCTGACCGTGGCGCGCGAGGCCACCGCCCTCAACGCAGCGCCACAGACT
GGCCAGAGCAGCGCCGTGCTCGCCGCACAGGTGGCCGAGGCGCGGCGACTGCAACTCGCCCGCCAGGGCTGCGCCAACGC
ATTTCTCGACCTGGTCGGCCTGCGTGAGCACTGCCAGCTGACCGCCGAGGACCAGGCCTGGCTGGAGCGCGCCTGCGAGC
GTCTCGCACTGTCCCTGCGCGCCGCACACCGGTTGCTCAAGGTCGCACGCACCCTGGCCGACCTGGAGCAGGCCGAACGC
ATCGGCCGGCAACATCTGGCCGAAGCGCTGCAATATCGCCCCGGCAGCCAGGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.566

99.398

0.562
  comM Glaesserella parasuis strain SC1401

55.578

100

0.56
  comM Vibrio campbellii strain DS40M4

56.162

99.398

0.558
  comM Haemophilus influenzae Rd KW20

54.89

100

0.552
  comM Legionella pneumophila str. Paris

51.186

100

0.52
  comM Legionella pneumophila strain ERS1305867

51.186

100

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.464