Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IF654_RS00620 Genome accession   NZ_CP062158
Coordinates   83767..85260 (+) Length   497 a.a.
NCBI ID   WP_047278844.1    Uniprot ID   -
Organism   Pseudomonas lundensis strain 2T.2.5.2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 78767..90260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF654_RS00595 (IF654_10320) - 79571..80260 (+) 690 WP_194862838.1 HAD family hydrolase -
  IF654_RS00600 (IF654_10315) sutA 80400..80726 (-) 327 WP_047278851.1 transcriptional regulator SutA -
  IF654_RS00605 (IF654_10310) - 81196..82533 (-) 1338 WP_047278849.1 ammonium transporter -
  IF654_RS00610 (IF654_10305) glnK 82568..82906 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  IF654_RS00615 (IF654_10300) - 83324..83584 (+) 261 WP_047278846.1 accessory factor UbiK family protein -
  IF654_RS00620 (IF654_10295) comM 83767..85260 (+) 1494 WP_047278844.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IF654_RS00625 (IF654_10290) - 85487..86902 (+) 1416 WP_094987328.1 SrfA family protein -
  IF654_RS00630 (IF654_10285) - 86921..89992 (+) 3072 WP_094987327.1 virulence factor SrfB -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52767.85 Da        Isoelectric Point: 8.3308

>NTDB_id=486549 IF654_RS00620 WP_047278844.1 83767..85260(+) (comM) [Pseudomonas lundensis strain 2T.2.5.2]
MSLAIVHSRAKVGVEAPVVTVEAHLANGLPALTLVGLPEAAVKESKDRVRSAILNAGFDFPARRITLNLAPADLPKDGGR
FDVAIALGILAASGQLPAVALENVEFLGELALSGAIRPVQGVLPAALAARAAGRALVVPVANAEEACLASGLTVIAVEHL
LQVVAHFAGRTVMEPYIASGLLQVSKPYPDLSDVQGQQSAKRALLVAAAGSHNLLFTGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIQSVASHEPLSSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GFIVIARARDRMRFPARFQLVAAMNPCPCGFLGEPTGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTSLNPLAQS
GDNTATAAASVALARGRQVQRQGCANAFLDLPGVRRHCQLTAVDNTWLENACERMTLSLRAAHRLLKVARTLADLEGAGS
IERRHLAEALQYRPVSG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=486549 IF654_RS00620 WP_047278844.1 83767..85260(+) (comM) [Pseudomonas lundensis strain 2T.2.5.2]
ATGTCTCTGGCGATTGTTCACAGCCGTGCCAAGGTGGGCGTTGAGGCGCCTGTAGTCACCGTCGAAGCGCACCTGGCCAA
TGGCCTGCCTGCGCTGACACTGGTCGGTTTGCCTGAAGCCGCCGTCAAAGAAAGCAAAGACCGGGTGCGCAGTGCGATCC
TCAACGCCGGTTTTGACTTCCCGGCTCGCCGCATCACGCTCAATCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATGTGGCCATCGCGCTGGGGATCTTGGCGGCCAGTGGGCAATTGCCTGCCGTGGCGCTGGAAAACGTGGAATTTCT
CGGTGAATTGGCGCTGTCGGGGGCGATTCGTCCGGTGCAGGGCGTTCTGCCCGCTGCTCTGGCTGCCCGGGCGGCGGGGC
GTGCGCTGGTGGTGCCCGTGGCCAATGCCGAGGAAGCCTGTCTGGCCTCCGGGTTGACGGTGATTGCGGTCGAGCATTTG
CTGCAAGTGGTCGCGCACTTTGCGGGCCGTACGGTGATGGAGCCTTACATCGCCAGCGGCCTGCTCCAAGTGAGCAAGCC
GTACCCAGACCTGAGCGATGTACAAGGCCAGCAATCGGCCAAGCGCGCTCTGCTGGTCGCCGCCGCTGGCAGCCATAACC
TCTTATTCACAGGCCCGCCCGGCACCGGTAAAACCCTGCTGGCCAGCCGCCTGCCCGGTTTACTGCCGCCGCTCGATGAA
CAGGAGGCGCTTGAGGTCGCGGCCATTCAGTCCGTGGCCAGCCATGAGCCGCTGAGCAGTTGGCCGCAACGCCCCTTTCG
TCAGCCCCATCACTCCGCGTCCGGCCCGGCATTGGTGGGCGGAGGTTCCAGGCCGCAGCCGGGTGAAATCACGCTGGCCC
ACCACGGCGTCTTGTTCCTCGATGAGTTGCCTGAGTTTGACCGCAAGGTGCTGGAGGTTTTACGCGAGCCAATGGAGTCG
GGCTTTATCGTGATAGCGCGAGCGCGAGACCGCATGCGTTTTCCGGCGCGCTTCCAGCTGGTGGCCGCCATGAACCCCTG
CCCATGCGGTTTTCTGGGAGAGCCCACCGGGCGCTGCCGCTGCACGCCGGAGCAGATCCAGCGATACCGCAACAAACTGT
CCGGTCCGCTGCTGGACCGTATCGACCTGCACCTGACCGTGGCCCGTGAAACCACCTCGCTCAATCCGCTCGCGCAATCG
GGCGACAACACCGCAACGGCTGCCGCCTCGGTGGCGTTGGCCCGTGGGCGGCAAGTTCAGCGCCAGGGCTGCGCCAATGC
GTTTCTCGACTTGCCCGGCGTGCGCCGCCATTGTCAGTTGACGGCTGTGGATAACACCTGGCTGGAAAACGCCTGCGAGC
GCATGACCTTGTCGTTGCGCGCGGCGCATCGCCTGTTGAAAGTGGCGCGCACGCTGGCGGATCTGGAAGGGGCTGGATCG
ATAGAACGCCGGCATCTGGCCGAGGCGTTGCAGTATCGGCCGGTCAGTGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.556

99.598

0.553
  comM Haemophilus influenzae Rd KW20

54.8

100

0.551
  comM Vibrio cholerae strain A1552

55.152

99.598

0.549
  comM Glaesserella parasuis strain SC1401

54.491

100

0.549
  comM Legionella pneumophila str. Paris

48.387

99.799

0.483
  comM Legionella pneumophila strain ERS1305867

48.387

99.799

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.328

100

0.459