Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IG196_RS00140 Genome accession   NZ_CP062121
Coordinates   37033..38481 (-) Length   482 a.a.
NCBI ID   WP_192194450.1    Uniprot ID   A0A7L8SFX5
Organism   Variovorax sp. 38R     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 32033..43481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG196_RS00130 (IG196_00130) tagF 34267..35010 (+) 744 WP_101493506.1 type VI secretion system-associated protein TagF -
  IG196_RS00135 (IG196_00135) - 35047..37020 (+) 1974 WP_192194449.1 serine/threonine-protein kinase -
  IG196_RS00140 (IG196_00140) comM 37033..38481 (-) 1449 WP_192194450.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IG196_RS00145 (IG196_00145) - 38699..39565 (+) 867 WP_192194451.1 TorF family putative porin -
  IG196_RS00150 (IG196_00150) glnK 39636..39974 (+) 339 WP_056583732.1 P-II family nitrogen regulator -
  IG196_RS00155 (IG196_00155) - 40004..41437 (+) 1434 WP_192194452.1 ammonium transporter -
  IG196_RS00160 (IG196_00160) - 41647..42576 (+) 930 WP_192194453.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 482 a.a.        Molecular weight: 50691.83 Da        Isoelectric Point: 8.2240

>NTDB_id=486135 IG196_RS00140 WP_192194450.1 37033..38481(-) (comM) [Variovorax sp. 38R]
MSLSLVQSRALLGLEAAAVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNAGLEFPTNKKIVVNLAPADLPKDSG
RFDLPIALGILAASGQIENHRLAGHEFAGELSLSGELRPVRGALAMAVATYTHGTAVRLVLPMDSAHEAALVPGAEVYGA
KHLLDVVRQFVAGGGGPVDASDDGWARVRAAPGDGAPRYADLADVKGHTGAKRALEIAAAGGHSLLMVGEPGSGKSMLAH
RFAGLLPPMNVDEALESAAIASLDGRLAPERWMSRPTATPHHTASAVALVGGGSPPRPGEISRAHHGVLFLDEFPEFTRA
ALEALREPLETGTITITRAARRAEFPARFQLIAAMNPCPCGYLGSTLRPCRCTPERVARYQSKLSGPLLDRIDLHIEVAA
VSAPQLLDAPAGESTDSIRARVVSARERALQRQGHANQALQGRAIDTHAVLDSAARQLLQQAAARLGWSARSTHRALRSG
AP

Nucleotide


Download         Length: 1449 bp        

>NTDB_id=486135 IG196_RS00140 WP_192194450.1 37033..38481(-) (comM) [Variovorax sp. 38R]
ATGAGTCTGTCTTTGGTGCAAAGCCGCGCCTTGCTCGGCCTGGAAGCCGCCGCCGTCACGGTCGAGGTGCATCTGGCGAA
CGGCCTGCCGAGCTTCACGTTGGTCGGGCTGGCCGAGACCGAGGTCAAGGAAGCGCGCGAACGCGTGCGCTCGGCGATCC
AGAACGCCGGGCTCGAATTTCCGACGAACAAGAAGATCGTGGTGAACCTCGCGCCCGCCGATCTGCCGAAGGACTCGGGC
CGCTTCGACCTGCCCATCGCCCTGGGCATCCTCGCGGCCAGCGGGCAGATCGAGAACCACCGGCTGGCCGGCCACGAGTT
CGCCGGCGAACTGTCGCTGTCGGGCGAGCTGCGTCCCGTGCGCGGCGCGCTCGCGATGGCCGTCGCCACCTACACGCACG
GCACCGCCGTGCGGCTGGTGCTGCCCATGGACAGCGCCCACGAGGCCGCGCTGGTGCCCGGCGCCGAGGTGTACGGGGCC
AAGCACCTGCTCGACGTGGTGCGGCAGTTCGTCGCCGGCGGCGGCGGGCCCGTCGATGCGAGCGACGACGGCTGGGCCCG
CGTGCGCGCCGCGCCCGGCGACGGCGCCCCACGCTATGCCGACCTGGCCGACGTCAAGGGCCACACCGGCGCCAAGCGCG
CGCTCGAAATCGCCGCAGCCGGTGGCCACAGCCTCTTGATGGTGGGCGAGCCGGGCTCGGGCAAGTCGATGCTGGCGCAC
CGCTTCGCCGGCCTGCTGCCGCCGATGAACGTGGACGAGGCGCTGGAAAGCGCGGCCATCGCCAGCCTCGACGGCCGGCT
GGCGCCCGAGCGCTGGATGAGCCGCCCGACGGCCACGCCGCACCACACGGCGAGCGCGGTGGCGCTGGTGGGCGGCGGCT
CGCCGCCGCGGCCGGGCGAGATCTCGCGCGCGCACCACGGCGTTCTGTTTTTGGACGAGTTCCCCGAGTTCACGCGCGCC
GCCCTCGAAGCGCTGCGCGAGCCGCTGGAGACCGGCACCATCACGATCACCCGCGCCGCCCGGCGCGCGGAGTTTCCGGC
GCGCTTCCAGCTCATCGCCGCCATGAACCCCTGCCCGTGCGGTTACCTCGGCTCCACGCTGAGGCCCTGCCGCTGCACGC
CCGAGCGCGTCGCGCGCTACCAGAGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCACATCGAAGTGGCGGCC
GTGTCGGCCCCGCAGCTGCTCGATGCGCCGGCCGGCGAATCGACCGACAGCATCCGTGCGCGTGTGGTGAGCGCACGCGA
ACGCGCGCTGCAACGCCAGGGCCATGCGAACCAGGCGCTGCAGGGCCGCGCGATCGACACGCACGCGGTGCTCGACAGCG
CCGCGCGCCAACTGCTGCAACAGGCAGCCGCGCGGCTGGGCTGGTCGGCGCGCAGCACGCACCGCGCGCTGCGCAGCGGC
GCACCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-478)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-403)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L8SFX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.792

99.585

0.496
  comM Legionella pneumophila str. Paris

48.963

100

0.49
  comM Legionella pneumophila strain ERS1305867

48.963

100

0.49
  comM Haemophilus influenzae Rd KW20

47.708

99.585

0.475
  comM Glaesserella parasuis strain SC1401

47.51

100

0.475
  comM Vibrio campbellii strain DS40M4

47.5

99.585

0.473
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.71

100

0.432