Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IGB07_RS16380 Genome accession   NZ_CP062058
Coordinates   3881187..3882707 (+) Length   506 a.a.
NCBI ID   WP_192021675.1    Uniprot ID   -
Organism   Shewanella sp. WPAGA9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3876187..3887707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGB07_RS16360 ilvY 3876457..3877329 (+) 873 WP_192021671.1 HTH-type transcriptional activator IlvY -
  IGB07_RS16365 - 3877367..3878377 (-) 1011 WP_192021672.1 substrate-binding domain-containing protein -
  IGB07_RS16370 - 3878746..3879993 (+) 1248 WP_192021673.1 YjgN family protein -
  IGB07_RS16375 - 3880022..3881047 (+) 1026 WP_192021674.1 M48 family metallopeptidase -
  IGB07_RS16380 comM 3881187..3882707 (+) 1521 WP_192021675.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IGB07_RS16385 - 3882850..3883746 (+) 897 WP_192021676.1 acyltransferase -
  IGB07_RS16390 - 3883751..3884683 (+) 933 WP_055026157.1 acyltransferase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55174.48 Da        Isoelectric Point: 7.7448

>NTDB_id=485936 IGB07_RS16380 WP_192021675.1 3881187..3882707(+) (comM) [Shewanella sp. WPAGA9]
MAIACVVTRACCGVEAPKVTVEVHLSNGLPAFNLVGLPETSVKEARERVRSALINAGFEFPMQRITVNLAPADLPKQGGR
YDLPIAIGILAASGQVPSDKLAHSEFIGELALSGEVRPCIGILPAIIAAKNQQHQLFIPLENRREAELVGFEQTHFVAHL
QHLAAFMHGQAQLPLVDQQPQWFEDEATGPQLCLSEVIGQYQAKQGLEIAAAGGHNTLFLGPPGTGKSMLANRIIPLLPK
LSYEEAIDVAAIHSVAGLNIKPNAFLERPFRAPHHTCSSISLVGGGSIPKPGEISLAHRGVLFLDEIAEFPRKVLDCLRE
PMESGEVVISRAAAKVKFSSRFQLIAAMNPSPCGDVDNARSTPDQIQRYLSKLSGPFLDRFDLTIEVPKLPAGTLTQPQQ
TAESSESIAKRVNQARQIQLSRAGLLNSELSPSLLKQHLNMNQADLEFLDASVQQLGLSVRSFHRIQRVARTIADLQQSK
TTERRHIAQALGYRAMDRLMHRLSQQ

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=485936 IGB07_RS16380 WP_192021675.1 3881187..3882707(+) (comM) [Shewanella sp. WPAGA9]
ATGGCGATTGCCTGCGTTGTCACACGTGCTTGCTGCGGCGTTGAAGCTCCTAAAGTCACAGTCGAAGTTCACCTAAGTAA
TGGATTACCTGCTTTTAATTTAGTCGGATTACCAGAAACCTCAGTAAAAGAAGCCCGTGAACGGGTTAGAAGTGCATTAA
TCAACGCCGGCTTTGAGTTTCCCATGCAGCGCATTACCGTTAACCTCGCTCCAGCCGACCTCCCCAAACAAGGAGGTCGA
TATGACTTGCCCATTGCAATCGGTATTTTAGCGGCTTCAGGCCAAGTGCCGTCGGATAAATTGGCTCACAGTGAATTTAT
TGGAGAGCTGGCGTTATCGGGAGAGGTTCGTCCATGTATTGGCATACTGCCAGCAATCATTGCAGCCAAAAACCAACAAC
ATCAATTGTTTATCCCTTTAGAAAACAGACGAGAAGCAGAGTTAGTCGGCTTTGAGCAAACTCACTTTGTTGCCCATTTA
CAGCACCTTGCCGCCTTTATGCATGGTCAAGCTCAACTACCACTTGTTGACCAGCAACCGCAATGGTTTGAAGATGAAGC
AACAGGCCCGCAGTTATGCTTAAGCGAAGTCATAGGCCAATATCAGGCCAAACAAGGGTTAGAAATCGCTGCAGCAGGTG
GGCACAATACTTTATTTTTAGGCCCTCCCGGCACCGGCAAAAGTATGCTCGCTAACCGAATCATTCCGCTATTGCCCAAG
CTCAGCTATGAAGAAGCTATTGATGTTGCCGCTATTCATTCTGTCGCAGGGTTAAACATCAAACCAAACGCTTTTCTTGA
ACGTCCCTTTAGAGCACCACACCACACATGCTCATCAATTTCATTAGTTGGCGGTGGCAGCATCCCAAAGCCAGGTGAGA
TATCACTAGCCCATAGAGGAGTATTGTTTTTAGATGAAATAGCCGAGTTTCCACGTAAAGTATTAGATTGCCTACGTGAA
CCTATGGAGTCTGGCGAAGTCGTCATTTCTCGCGCAGCAGCAAAAGTAAAATTCTCGAGTCGTTTTCAATTGATTGCAGC
CATGAACCCAAGCCCTTGTGGCGATGTAGATAATGCCCGCTCAACCCCCGACCAAATTCAGCGTTATCTATCTAAACTTT
CAGGTCCATTTTTAGACCGTTTTGATTTAACAATCGAAGTCCCTAAACTGCCAGCAGGCACTCTCACCCAACCCCAGCAA
ACGGCCGAAAGCAGTGAAAGCATTGCCAAAAGGGTCAATCAAGCAAGACAGATACAGTTATCGCGCGCAGGTTTGCTTAA
CAGTGAACTGTCCCCTTCACTGTTAAAACAGCATTTAAACATGAACCAAGCTGACTTAGAGTTTTTAGACGCAAGTGTAC
AGCAGCTCGGTTTATCTGTGAGAAGCTTTCATCGGATCCAGCGGGTTGCTCGAACCATCGCAGACCTACAACAATCCAAA
ACAACTGAAAGACGTCATATTGCTCAAGCATTAGGCTATCGAGCCATGGATAGGTTGATGCATCGATTGAGTCAGCAGTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.512

100

0.557
  comM Vibrio campbellii strain DS40M4

54.528

100

0.547
  comM Haemophilus influenzae Rd KW20

53.922

100

0.543
  comM Glaesserella parasuis strain SC1401

53.36

100

0.534
  comM Legionella pneumophila str. Paris

46.894

98.617

0.462
  comM Legionella pneumophila strain ERS1305867

46.894

98.617

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.141

99.407

0.429