Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IE322_RS22320 Genome accession   NZ_CP061848
Coordinates   4888120..4889610 (-) Length   496 a.a.
NCBI ID   WP_100412826.1    Uniprot ID   -
Organism   Pseudomonas asiatica strain C3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4883120..4894610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE322_RS22310 (IE322_22310) - 4886553..4887545 (+) 993 WP_100412827.1 response regulator -
  IE322_RS22315 (IE322_22315) - 4887542..4887910 (+) 369 WP_023662911.1 response regulator transcription factor -
  IE322_RS22320 (IE322_22320) comM 4888120..4889610 (-) 1491 WP_100412826.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IE322_RS22325 (IE322_22325) - 4889750..4890016 (-) 267 WP_025341076.1 accessory factor UbiK family protein -
  IE322_RS22330 (IE322_22330) glnK 4890537..4890875 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  IE322_RS22335 (IE322_22335) - 4890922..4892253 (+) 1332 WP_191472056.1 ammonium transporter -
  IE322_RS22340 (IE322_22340) sutA 4892683..4893012 (+) 330 WP_013974748.1 transcriptional regulator SutA -
  IE322_RS22345 (IE322_22345) - 4893193..4893888 (-) 696 WP_013974747.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52808.57 Da        Isoelectric Point: 7.7255

>NTDB_id=485108 IE322_RS22320 WP_100412826.1 4888120..4889610(-) (comM) [Pseudomonas asiatica strain C3]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPMATLAEVECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHAPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAAKVAEARELQQRRQGCANAFLDLEGLRRHCGLAAADQAWLEGACERLTLSLRAAHRLLKVARTLADLEGSQAI
GRAHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=485108 IE322_RS22320 WP_100412826.1 4888120..4889610(-) (comM) [Pseudomonas asiatica strain C3]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTGGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCTTGCCCCATCTCACTCTGGTCGGTCTGCCGGAAACCACGGTCAAAGAAAGCAAGGACCGGGTACGCAGCGCCATCG
TCAACTCCGGGTTGAACTATCCGCAGCGGCGCATCACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TATGACCTGGCCATTGCCCTGGGTATCCTCGCCGCCGATGGCCAGGTACCAATGGCCACCCTTGCCGAGGTCGAATGCCT
TGGCGAACTGGCACTGTCTGGCAAGTTGCGCCCGGTGCAGGGCGTGCTGCCCGCGGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTGCCACGGGAAAACGCCGAGGAAGCCAGCCTGGCAGGCGGGCTGGTGGTGTATGCGGTGGGGCACCTG
CTGGAGCTGGTCGCCCACCTGAACGGCCAGGTGCCGTTGCCGCCGTATGCGGCCAACGGCCTGATCCTGCAGCAACGCCC
GTACCCGGACCTGAGCGAGGTGCAGGGCCAACTGGCTGCCAAGCGTGCACTGCTGCTAGCGGCGGCCGGGGCACATAACT
TGCTGTTCACCGGGCCTCCCGGTACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCGGGGCTGCTGCCACCGCTGGACGAG
CACGAGGCACTGGAAGTGGCGGCGATCCAGTCGGTCAGCGGCCATGCGCCTCTGAGCAGCTGGCCGCAGCGGCCTTTTCG
CCATCCACACCACTCCGCCTCCGGCCCGGCGCTGGTCGGCGGCAGCAGCCGGCCACAACCGGGCGAAATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTGGACGAGCTGCCAGAATTCGAGCGGCGTGTGCTGGAAGTGTTGCGCGAGCCGCTGGAGTCG
GGCGAGATCGTGATTGCCCGGGCCCGCGACAAGGTGCGCTTCCCCGCACGTTTCCAGCTGGTGGCGGCAATGAACCCCTG
CCCTTGCGGCTATCTGGGCGACCCCACTGGCCGCTGCCGCTGCAGTACCGAGCAGATCGCGCGGTATCGCAACAAGCTGT
CCGGGCCGTTGCTGGACCGTATCGACCTGCACCTGACCGTGGCCCGGGAGAGCACCACGCTGAACAACCAGCCCTGCGGC
GAGACCAGTGCCGATGTGGCGGCCAAGGTAGCCGAGGCACGTGAACTGCAACAGCGGCGGCAAGGGTGTGCGAATGCGTT
TCTCGACCTTGAGGGGTTGCGCCGCCATTGTGGCTTGGCAGCGGCGGACCAGGCCTGGCTGGAGGGGGCATGTGAACGGC
TGACCCTGTCGTTGCGCGCGGCACACCGGTTGCTGAAGGTGGCGCGGACGCTGGCGGATCTGGAAGGTAGCCAGGCAATT
GGCCGGGCGCATCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.6

100

0.56
  comM Vibrio campbellii strain DS40M4

55.556

99.798

0.554
  comM Vibrio cholerae strain A1552

55.152

99.798

0.55
  comM Glaesserella parasuis strain SC1401

53.892

100

0.544
  comM Legionella pneumophila str. Paris

49.395

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.012

100

0.476