Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H2514_RS12490 Genome accession   NZ_CP061847
Coordinates   2831478..2832992 (+) Length   504 a.a.
NCBI ID   WP_036194435.1    Uniprot ID   A0A0A0EQ17
Organism   Lysobacter sp. CW239     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2826478..2837992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2514_RS12470 (H2514_12470) - 2826744..2828663 (+) 1920 WP_191150481.1 diguanylate cyclase -
  H2514_RS12475 (H2514_12475) - 2828715..2830559 (-) 1845 WP_224743881.1 DUF4153 domain-containing protein -
  H2514_RS12480 (H2514_12480) - 2830600..2830938 (-) 339 WP_036194432.1 P-II family nitrogen regulator -
  H2514_RS12485 (H2514_12485) - 2831157..2831468 (+) 312 WP_036194433.1 accessory factor UbiK family protein -
  H2514_RS12490 (H2514_12490) comM 2831478..2832992 (+) 1515 WP_036194435.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H2514_RS12495 (H2514_12495) - 2833555..2834730 (-) 1176 WP_036194437.1 putative peptide maturation dehydrogenase -
  H2514_RS12500 (H2514_12500) - 2834896..2835246 (+) 351 WP_084105667.1 NHLP-related RiPP peptide -
  H2514_RS12505 (H2514_12505) - 2835186..2837852 (-) 2667 WP_036194440.1 putative peptide modification system cyclase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53599.60 Da        Isoelectric Point: 9.4442

>NTDB_id=485088 H2514_RS12490 WP_036194435.1 2831478..2832992(+) (comM) [Lysobacter sp. CW239]
MNLALVHSRARSGVRAPAVRVEVHLAGGLPAMSIVGLPEAAVREAKDRVRAAIQCAQFEFPSRRITVNLAPADLPKSGGR
FDLPIALGILAASGQIPLEALAEYEFLGELGLTGELRGIDGVLPAALAAADAGRKLIVPLGNGAEAALASRSEARTARTL
LEVCAMLTGHKSLPRAVALPTVRERGPDMSDVRGQSHARRALEVAAAGGHHLLLVGPPGCGKTLLASRLPGLLPEASEEE
ALESAAIASISGRGLDPARWRERPFRTPHHTASAVALVGGGADPRPGEISLAHNGVLFLDELPEWGRRALEVLREPLESG
VVTISRAARSSEFPARFQLVAAMNPCPCGWAGDASGRCRCSPDMVLGYRARLSGPLMDRIDLHVEVPRLPPSALRPDAPP
SESSQVVRERVLRARNLQASRAGKPNARLNQPETVATCRLSHSDQALLEHAIDTLQLSARSMHRILRVARTIADLADSPH
IRTSHLTEAIGYRRMDRGVALQTA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=485088 H2514_RS12490 WP_036194435.1 2831478..2832992(+) (comM) [Lysobacter sp. CW239]
ATGAACCTGGCACTCGTGCACAGCCGTGCACGATCGGGCGTACGTGCGCCTGCGGTTCGGGTCGAGGTCCACCTCGCCGG
CGGGCTGCCGGCGATGTCGATCGTCGGATTGCCCGAAGCCGCCGTGCGCGAAGCCAAGGATCGGGTCCGGGCGGCGATCC
AGTGCGCCCAGTTCGAATTTCCCTCGCGCCGGATCACGGTCAACCTGGCCCCGGCCGACCTGCCCAAGAGCGGCGGCCGG
TTCGACCTGCCGATCGCGCTGGGCATCCTGGCCGCCAGCGGCCAGATCCCGCTGGAAGCACTGGCGGAATATGAGTTCCT
CGGCGAGCTGGGCCTGACCGGCGAGCTGCGCGGGATCGACGGCGTGCTGCCGGCCGCGCTGGCCGCCGCCGACGCCGGTC
GCAAACTGATCGTGCCGCTAGGCAACGGGGCCGAGGCCGCCCTCGCCAGCCGGTCCGAGGCACGCACCGCGCGCACCCTG
CTGGAAGTCTGCGCGATGCTGACCGGCCACAAGTCGCTGCCGCGGGCGGTCGCGCTGCCGACCGTGCGCGAACGCGGTCC
CGACATGAGCGATGTGCGCGGGCAGTCCCACGCGCGCAGGGCGCTGGAAGTCGCCGCGGCCGGTGGCCATCACCTGTTGC
TGGTCGGACCGCCCGGCTGCGGCAAGACCCTGCTGGCATCGCGGCTGCCCGGCCTGCTGCCCGAAGCCAGCGAGGAGGAA
GCCCTGGAGTCCGCCGCGATCGCCTCCATCAGTGGCCGCGGCCTGGATCCGGCCCGCTGGCGCGAACGTCCGTTCCGCAC
CCCGCACCACACTGCCAGCGCAGTGGCACTGGTCGGCGGCGGCGCGGATCCGCGGCCCGGCGAGATTTCCCTGGCCCACA
ACGGCGTGCTGTTCCTCGACGAGCTGCCCGAATGGGGCCGGCGCGCGCTGGAAGTATTGCGCGAGCCGCTGGAATCGGGC
GTGGTCACGATCTCACGCGCGGCGCGCAGCTCGGAATTCCCGGCCCGGTTCCAACTGGTCGCGGCGATGAATCCCTGCCC
GTGCGGCTGGGCCGGCGACGCCAGTGGCCGCTGCCGCTGCAGCCCCGACATGGTGTTGGGCTATCGAGCCCGCCTGTCCG
GTCCGCTGATGGACCGGATCGACCTGCATGTCGAAGTGCCGCGCCTGCCGCCCTCGGCCCTGCGCCCGGACGCGCCGCCC
AGCGAGTCCAGCCAGGTCGTGCGCGAACGCGTCCTGCGGGCAAGGAACCTGCAGGCCAGCCGCGCCGGCAAGCCCAACGC
CCGGCTCAACCAGCCGGAGACGGTGGCCACCTGCCGGCTCTCCCATTCCGACCAGGCGCTGCTGGAGCACGCGATCGACA
CCCTGCAGCTGTCGGCCCGCTCGATGCACCGGATCCTGCGGGTCGCCCGTACCATCGCCGACCTTGCCGACAGCCCGCAC
ATCCGCACCTCGCACCTGACCGAAGCCATCGGCTACAGGCGCATGGACCGCGGCGTGGCGTTGCAGACGGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A0EQ17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.635

100

0.55
  comM Vibrio cholerae strain A1552

54.91

99.008

0.544
  comM Haemophilus influenzae Rd KW20

53.953

100

0.542
  comM Glaesserella parasuis strain SC1401

54.167

100

0.542
  comM Legionella pneumophila str. Paris

52.209

98.81

0.516
  comM Legionella pneumophila strain ERS1305867

52.209

98.81

0.516
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.187

100

0.456