Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IF132_RS12660 Genome accession   NZ_CP061845
Coordinates   1514846..1515358 (-) Length   170 a.a.
NCBI ID   WP_039423015.1    Uniprot ID   A0A099LQ25
Organism   Vibrio navarrensis strain 2540-90     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1509846..1520358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF132_RS12645 (IF132_13685) aroB 1511188..1512279 (-) 1092 WP_039423024.1 3-dehydroquinate synthase -
  IF132_RS12650 (IF132_13690) aroK 1512312..1512830 (-) 519 WP_039423021.1 shikimate kinase AroK -
  IF132_RS12655 (IF132_13695) pilQ 1513040..1514827 (-) 1788 WP_039423018.1 type IV pilus secretin PilQ Machinery gene
  IF132_RS12660 (IF132_13700) pilP 1514846..1515358 (-) 513 WP_039423015.1 pilus assembly protein PilP Machinery gene
  IF132_RS12665 (IF132_13705) pilO 1515348..1515938 (-) 591 WP_039423012.1 type 4a pilus biogenesis protein PilO Machinery gene
  IF132_RS12670 (IF132_13710) pilN 1515931..1516518 (-) 588 WP_039423009.1 PilN domain-containing protein Machinery gene
  IF132_RS12675 (IF132_13715) pilM 1516502..1517521 (-) 1020 WP_039423006.1 type IV pilus biogenesis protein PilM Machinery gene
  IF132_RS12680 (IF132_13720) - 1517660..1520176 (+) 2517 WP_039423004.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18967.93 Da        Isoelectric Point: 9.9068

>NTDB_id=485035 IF132_RS12660 WP_039423015.1 1514846..1515358(-) (pilP) [Vibrio navarrensis strain 2540-90]
MKSSWWMFSVVLLLAGCRANSDSLDDFLRQVESQARQEVAKLKPEQEYVATSYASAALRLPFELPKEAVIATQPVVKKEC
WQPAERTRSGRLERYPLSQLRLKGIMGSGNSVSGLVQTPQGTVERVLAGQYIGQNNGKVTLITPSYLMINETLPDGLGCW
QQRKVKLALR

Nucleotide


Download         Length: 513 bp        

>NTDB_id=485035 IF132_RS12660 WP_039423015.1 1514846..1515358(-) (pilP) [Vibrio navarrensis strain 2540-90]
ATGAAAAGTAGCTGGTGGATGTTCTCGGTTGTATTGCTGTTGGCAGGTTGTCGCGCCAACAGTGACTCTTTGGATGACTT
TCTGCGTCAGGTGGAATCACAGGCTCGCCAAGAGGTCGCCAAGCTCAAACCAGAGCAGGAGTATGTCGCGACATCGTACG
CCTCGGCGGCGCTGCGTTTGCCCTTTGAACTGCCCAAAGAAGCGGTGATAGCCACCCAGCCGGTGGTGAAAAAAGAGTGC
TGGCAACCCGCTGAACGTACCCGCTCCGGCCGTTTAGAACGCTATCCGCTCAGCCAACTGCGTTTAAAAGGCATCATGGG
CAGCGGTAACTCCGTTTCCGGCTTAGTGCAAACCCCGCAAGGAACGGTCGAGCGGGTACTCGCTGGGCAATACATTGGGC
AGAACAACGGCAAAGTGACGCTGATTACTCCCTCGTATTTAATGATCAATGAAACCTTACCCGATGGGCTAGGTTGTTGG
CAGCAGCGTAAAGTCAAGCTGGCATTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(24-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099LQ25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

66.467

98.235

0.653
  pilP Vibrio cholerae strain A1552

60

97.059

0.582