Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   J9247_RS17650 Genome accession   NZ_CP072783
Coordinates   3843775..3844446 (-) Length   223 a.a.
NCBI ID   WP_033968082.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LICME WGH-6     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3838775..3849446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9247_RS17635 (J9247_17635) - 3839893..3842037 (+) 2145 WP_033968086.1 methyl-accepting chemotaxis protein -
  J9247_RS17640 (J9247_17640) - 3842042..3842350 (-) 309 WP_003097699.1 hypothetical protein -
  J9247_RS17645 (J9247_17645) carS 3842441..3843778 (-) 1338 WP_033968084.1 two-component system sensor histidine kinase CarS -
  J9247_RS17650 (J9247_17650) ciaR 3843775..3844446 (-) 672 WP_033968082.1 two-component system response regulator CarR Regulator
  J9247_RS17655 (J9247_17655) - 3844446..3844760 (-) 315 WP_003097704.1 PepSY domain-containing protein -
  J9247_RS17660 (J9247_17660) - 3844760..3845068 (-) 309 WP_003090497.1 PepSY domain-containing protein -
  J9247_RS17665 (J9247_17665) - 3845283..3846365 (+) 1083 WP_003113385.1 hypothetical protein -
  J9247_RS17670 (J9247_17670) - 3846392..3847285 (+) 894 WP_003131077.1 hypothetical protein -
  J9247_RS17675 (J9247_17675) - 3847269..3847535 (+) 267 WP_119518346.1 DUF5329 domain-containing protein -
  J9247_RS17680 (J9247_17680) - 3847536..3848729 (-) 1194 WP_210224744.1 NnrS family protein -
  J9247_RS17685 (J9247_17685) ppyR 3848716..3848973 (-) 258 WP_003090502.1 psl/pyoverdine operon transcriptional regulator PpyR -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24743.22 Da        Isoelectric Point: 5.8445

>NTDB_id=484903 J9247_RS17650 WP_033968082.1 3843775..3844446(-) (ciaR) [Pseudomonas aeruginosa strain LICME WGH-6]
MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAALQGASEPYDLIILDLGLPGRPGLEILQEWRGLGLATPVLILTA
RGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAHGLANQSQLEAAGLRLDEQRQCVCLNGADVDLTAAEFRLLR
YFMLHPGQVLSKGHLAEHLYDGETERDSNVIEVHVNHLRRKLGREVIETRRGQGYRYAGVAAG

Nucleotide


Download         Length: 672 bp        

>NTDB_id=484903 J9247_RS17650 WP_033968082.1 3843775..3844446(-) (ciaR) [Pseudomonas aeruginosa strain LICME WGH-6]
ATGCGGTTGCTGCTGGTTGAGGATCACGTTCCCCTGGCCGACGAACTGATGGCCAGCCTGACCCGCCAGGGCTACGCGGT
GGACTGGCTGGCCGACGGCCGCGACGCGGCGCTGCAGGGCGCCAGCGAACCCTACGACCTGATCATCCTCGACCTCGGCC
TGCCCGGGCGTCCCGGCCTGGAGATACTCCAGGAGTGGCGTGGCCTGGGCCTCGCGACTCCGGTGCTGATCCTCACCGCG
CGCGGTTCCTGGGCCGAGCGCATCGATGGGCTCAAGGCCGGCGCCGACGACTACCTGACCAAGCCATTCCATCCGGAAGA
GCTGGCCTTGCGCATCCAGGCCCTGTTGCGCCGCGCCCATGGGCTGGCCAACCAGAGCCAGCTGGAGGCCGCCGGGCTGC
GCCTGGACGAGCAGCGCCAGTGCGTGTGCCTGAACGGCGCCGACGTCGACCTGACCGCCGCCGAATTCCGCCTGCTGCGC
TATTTCATGCTGCACCCCGGCCAGGTCCTGTCCAAGGGGCACCTGGCCGAGCATCTGTACGACGGCGAGACCGAACGCGA
TTCCAACGTCATCGAGGTCCACGTCAACCACCTGCGGCGCAAGCTCGGTCGCGAGGTGATCGAGACCCGCCGCGGCCAGG
GCTACCGCTACGCCGGGGTGGCCGCCGGATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-216)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

37.727

98.655

0.372
  ciaR Streptococcus pneumoniae Rx1

37.273

98.655

0.368
  ciaR Streptococcus pneumoniae D39

37.273

98.655

0.368
  ciaR Streptococcus pneumoniae R6

37.273

98.655

0.368
  ciaR Streptococcus pneumoniae TIGR4

37.273

98.655

0.368
  micA Streptococcus pneumoniae Cp1015

35.683

100

0.363
  vicR Streptococcus mutans UA159

35.526

100

0.363