Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IDM36_RS01320 Genome accession   NZ_CP061801
Coordinates   284356..284880 (+) Length   174 a.a.
NCBI ID   WP_008503384.1    Uniprot ID   A0A156LWB5
Organism   Enterobacter mori strain HSW1412     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 279356..289880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IDM36_RS01305 (IDM36_01305) aphA 280094..280807 (+) 714 WP_182273406.1 acid phosphatase AphA -
  IDM36_RS01310 (IDM36_01310) - 280925..281278 (+) 354 WP_182273407.1 MmcQ/YjbR family DNA-binding protein -
  IDM36_RS01315 (IDM36_01315) uvrA 281282..284104 (-) 2823 WP_182919259.1 excinuclease ABC subunit UvrA -
  IDM36_RS01320 (IDM36_01320) ssb 284356..284880 (+) 525 WP_008503384.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IDM36_RS01325 (IDM36_01325) - 284942..285223 (-) 282 WP_172514016.1 YjcB family protein -
  IDM36_RS01330 (IDM36_01330) - 285702..287102 (+) 1401 WP_182919260.1 sensor domain-containing diguanylate cyclase -
  IDM36_RS01335 (IDM36_01335) - 287442..289004 (+) 1563 WP_182273410.1 EAL domain-containing protein -
  IDM36_RS01340 (IDM36_01340) soxS 289014..289340 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18593.60 Da        Isoelectric Point: 5.2456

>NTDB_id=484749 IDM36_RS01320 WP_008503384.1 284356..284880(+) (ssb) [Enterobacter mori strain HSW1412]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=484749 IDM36_RS01320 WP_008503384.1 284356..284880(+) (ssb) [Enterobacter mori strain HSW1412]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAATACCTGCGTAAAGGTTCTCAGGTTTATATT
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCTGAAAAATACACCACCGAAGTGGTGGTCAACGTTGG
CGGTACCATGCAGATGTTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCACAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCTCCGGCTCCG
TCTAACGAACCACCAATGGACTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A156LWB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368