Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J8N08_RS05500 Genome accession   NZ_CP072745
Coordinates   1120730..1121305 (-) Length   191 a.a.
NCBI ID   WP_003515262.1    Uniprot ID   A0A1B9V2D8
Organism   Agrobacterium tumefaciens strain BIM B-441     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1115730..1126305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8N08_RS05485 (J8N08_05465) gyrA 1115753..1118545 (-) 2793 WP_003515259.1 DNA gyrase subunit A -
  J8N08_RS05490 (J8N08_05470) - 1118763..1119392 (+) 630 WP_003515260.1 MarC family protein -
  J8N08_RS05495 (J8N08_05475) - 1119516..1120664 (+) 1149 WP_003515261.1 HPP family protein -
  J8N08_RS05500 (J8N08_05480) ssb 1120730..1121305 (-) 576 WP_003515262.1 single-stranded DNA-binding protein Machinery gene
  J8N08_RS05505 (J8N08_05485) uvrA 1121571..1124492 (+) 2922 WP_003515263.1 excinuclease ABC subunit UvrA Machinery gene
  J8N08_RS05510 (J8N08_05490) - 1124549..1125349 (+) 801 WP_003515264.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20327.24 Da        Isoelectric Point: 4.7391

>NTDB_id=484741 J8N08_RS05500 WP_003515262.1 1120730..1121305(-) (ssb) [Agrobacterium tumefaciens strain BIM B-441]
MQLPVTMAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCK
VVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEVVLQGFNSTLTMLDGRGEGGGGSRSGGDIGGGDYGSGGGNYGGGY
DQQPAARGGASRGGSQPSGGFSSDMDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=484741 J8N08_RS05500 WP_003515262.1 1120730..1121305(-) (ssb) [Agrobacterium tumefaciens strain BIM B-441]
ATGCAATTGCCGGTCACGATGGCTGGCGGACAGGATGACGAGATGGCTGGTAGCGTAAACAAGGTAATTCTGATTGGGAA
CGTTGGCGCCGATCCCGAAATTCGCCGGACGCAGGACGGCCGTCCGATTGCCAATCTGCGTATCGCCACGTCGGAGACGT
GGCGGGACCGCAACAGCGGCGAGCGCAAGGAAAAGACAGAATGGCACACGGTCGTCGTTTTCAACGAAGGCCTGTGCAAG
GTTGTCGAACAATATGTGAAAAAGGGCGCCAAGCTCTACATTGAAGGCCAGCTGCAGACGCGCAAGTGGCAGGACCAGAC
CGGTAACGACCGTTACTCCACCGAAGTGGTACTGCAGGGCTTCAACTCCACGCTGACGATGCTCGACGGTCGCGGCGAAG
GTGGCGGCGGCAGCCGCAGCGGTGGCGACATCGGCGGTGGAGATTATGGCAGCGGCGGCGGTAACTACGGTGGCGGTTAC
GACCAGCAGCCGGCGGCCCGCGGCGGTGCCTCGCGTGGCGGCAGCCAGCCTTCCGGCGGCTTCTCCAGTGACATGGACGA
CGATATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(19-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9V2D8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.299

91.099

0.476
  ssb Glaesserella parasuis strain SC1401

43.523

100

0.44
  ssb Neisseria meningitidis MC58

37.766

98.429

0.372
  ssb Neisseria gonorrhoeae MS11

37.766

98.429

0.372