Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   J8N08_RS05505 Genome accession   NZ_CP072745
Coordinates   1121571..1124492 (+) Length   973 a.a.
NCBI ID   WP_003515263.1    Uniprot ID   A0A1B9UEG4
Organism   Agrobacterium tumefaciens strain BIM B-441     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1116571..1129492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8N08_RS05490 (J8N08_05470) - 1118763..1119392 (+) 630 WP_003515260.1 MarC family protein -
  J8N08_RS05495 (J8N08_05475) - 1119516..1120664 (+) 1149 WP_003515261.1 HPP family protein -
  J8N08_RS05500 (J8N08_05480) ssb 1120730..1121305 (-) 576 WP_003515262.1 single-stranded DNA-binding protein Machinery gene
  J8N08_RS05505 (J8N08_05485) uvrA 1121571..1124492 (+) 2922 WP_003515263.1 excinuclease ABC subunit UvrA Machinery gene
  J8N08_RS05510 (J8N08_05490) - 1124549..1125349 (+) 801 WP_003515264.1 DUF72 domain-containing protein -
  J8N08_RS05515 (J8N08_05495) dusA 1125355..1126362 (-) 1008 WP_333704214.1 tRNA dihydrouridine(20/20a) synthase DusA -
  J8N08_RS05520 (J8N08_05500) - 1126646..1127263 (-) 618 WP_174061341.1 hypothetical protein -
  J8N08_RS05525 (J8N08_05505) - 1127307..1127825 (-) 519 WP_003515267.1 MltR family transcriptional regulator -

Sequence

Protein


Download         Length: 973 a.a.        Molecular weight: 107177.22 Da        Isoelectric Point: 6.7160

>NTDB_id=484742 J8N08_RS05505 WP_003515263.1 1121571..1124492(+) (uvrA) [Agrobacterium tumefaciens strain BIM B-441]
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDRIE
GLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGVPYSPATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRG
RKGEYKKELAELMKKGFQRVKVDGQFYEIADVPVLDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAVAEFA
DKPLPPEETSAGGSANKSLNETHERMLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPTCDGLGSQQKVDENLIVPEPA
RTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWTDLSKEAQHAILQGTDDKIEFNYQDGARSYKTVKNFEGIVPN
LERRWKETDSAWAREEIERYMSAAPCPACAGYRLKPEALAVKINRMHIGEVTQMSIRMARDWFETLPENLNAKQNEIAVR
ILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKHLRDIG
NTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGTPQEVMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGA
RGNNLKNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHDRIDGFEFIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLDVT
FKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQALFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEP
TTGLHFHDVNKLLEMLQALVDQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKNERSYTGHFLKEL
LERRPAGKREAAE

Nucleotide


Download         Length: 2922 bp        

>NTDB_id=484742 J8N08_RS05505 WP_003515263.1 1121571..1124492(+) (uvrA) [Agrobacterium tumefaciens strain BIM B-441]
ATGAGTGAACTGAAGACGATTTCCATCCGTGGTGCCCGTGAGCATAACCTCAAGGGTATCGATCTGGATCTACCGCGCAA
TAAGCTGATCGTCATGACCGGGCTCTCCGGCTCGGGCAAGTCGTCGCTCGCCTTCGACACAATCTATGCTGAGGGCCAGC
GCCGTTATGTCGAGAGCCTCTCGGCCTATGCGCGCCAGTTCCTCGAAATGATGCAGAAGCCGGATGTAGACCGCATCGAG
GGGCTTTCTCCGGCGATTTCCATCGAGCAGAAAACCACCTCGAAGAACCCGCGCTCCACGGTCGGCACGGTCACGGAAAT
CTACGACTATATGCGCCTGCTGTTTGCGCGTGTCGGCGTGCCTTACTCGCCGGCGACGGGCCTGCCGATCGAGAGCCAGA
CGGTCAGCCAGATGGTCGACCGTATCCTTGCCTTCGAGGAAGGCACGCGCCTTTATATTCTCGCGCCGATCGTGCGCGGC
CGCAAAGGCGAATATAAAAAGGAACTCGCCGAGCTGATGAAGAAGGGCTTCCAGCGCGTCAAGGTGGATGGCCAGTTCTA
CGAGATCGCTGACGTTCCCGTCCTCGACAAGAAGTACAAACACGATATCGATGTGGTGGTGGACCGCGCCGTCGTGCGCC
CGGATATGGCAGCACGCCTTGCCGACAGTCTCGAGACCTGCCTCAAGCTTGCCGACGGGTTGGCAGTGGCCGAATTTGCC
GACAAGCCCCTGCCGCCGGAAGAAACCTCGGCTGGCGGCTCCGCAAACAAATCGCTCAATGAGACCCACGAGCGTATGCT
GTTTTCGGAAAAATTCGCCTGCCCGGTCTCCGGCTTCACCATCCCGGAAATCGAGCCCCGGCTTTTCTCCTTCAACAATC
CCTTCGGCGCCTGCCCCACCTGTGACGGTCTCGGCTCGCAGCAGAAGGTGGACGAAAACCTGATCGTGCCCGAACCTGCA
CGCACCCTGCGGGATGGCGCGATCGCCCCCTGGGCCAAGTCGTCTTCCCCCTATTACAACCAGACGCTGGAGGCGCTGGG
CAAGGCCTTCGGTTTCAAGCTGTCGAGCAAATGGACGGACCTTTCGAAAGAGGCGCAGCACGCCATTCTCCAGGGCACTG
ACGACAAGATCGAGTTCAACTATCAGGACGGTGCGCGCTCCTACAAGACGGTGAAGAATTTCGAAGGCATCGTTCCCAAT
CTGGAGCGTCGCTGGAAAGAGACTGACAGCGCCTGGGCGCGCGAGGAAATCGAGCGTTATATGTCGGCGGCCCCCTGCCC
GGCCTGCGCCGGCTATCGCCTGAAGCCGGAAGCGCTCGCCGTCAAGATCAACAGGATGCACATCGGCGAAGTCACCCAGA
TGTCGATCCGTATGGCACGCGACTGGTTCGAGACGCTGCCGGAAAATCTGAACGCCAAACAGAACGAGATCGCGGTTCGC
ATTCTCAAGGAAATCCGCGAACGTCTGCGATTCCTCAACGATGTCGGGCTGGATTATCTCAGCCTGTCACGCAATTCCGG
AACGCTTTCCGGCGGAGAAAGCCAGCGCATCCGGCTTGCTTCGCAGATCGGTTCCGGCCTCACGGGTGTGCTCTATGTTC
TGGACGAGCCCTCCATCGGCCTGCACCAGCGCGACAATGCCCGCCTGCTCGATACGCTGAAACATCTGCGTGATATCGGC
AATACGGTGATTGTGGTCGAACACGACGAGGATGCCATTCTGACGGCGGATTACGTTGTCGATATCGGCCCCGCCGCCGG
CATTCACGGCGGTCAGGTCATCGCCGAAGGCACGCCGCAGGAGGTCATGGCCAATCCGAAATCGCTGACCGGCAAATATC
TATCCGGCGAACTTGGCGTCGCCGTGCCGGCAGAACGCCGCAAGCCGAAGAAGGGCCGCGAAATCAAGGTTTTTGGCGCA
CGCGGCAACAACCTGAAGAATGTGACTGCGGCCGTTCCCCTTGGCGTGTTCACCGCCGTTACCGGCGTGTCGGGTGGTGG
CAAATCCACCTTCCTGATCGAGACGCTCTATAAGTCGGCAGCACGCCGGGTGATGGGCGCGCGCGAAATTCCGGCCGAGC
ATGACCGCATCGATGGTTTCGAATTCATCGACAAGGTGATCGATATCGACCAGTCGCCAATCGGCCGCACGCCACGATCA
AACCCCGCCACCTACACCGGCGCATTTACGCCTATCCGTGACTGGTTCGCCGGTCTGCCGGAGGCGAAGGCGCGAGGTTA
TGCACCTGGCCGTTTCTCCTTCAACGTCAAGGGTGGCCGCTGCGAAGCCTGCCAGGGCGACGGCGTCATCAAGATCGAGA
TGCACTTCCTGCCTGATGTCTATGTCACCTGCGACGTCTGCCACGGCAAGCGTTACAATCGCGAGACGCTGGATGTGACC
TTCAAGGGCAAGTCCATTGCCGACGTGCTTGATATGACGGTGGAAGAAGGCGTTGAATTCTTCGCCGCCGTTCCGGCCGT
GCGTGACAAGCTGCAAGCGCTGTTCGATGTCGGCCTTGGTTACATCAAGGTCGGCCAGCAGGCCAATACGCTCTCCGGCG
GCGAGGCGCAGCGCGTCAAGCTCGCCAAGGAACTGTCAAAACGCTCCACCGGTCGCACGCTCTACATCCTCGATGAACCG
ACGACGGGTCTCCATTTCCACGACGTCAACAAGCTTTTGGAAATGCTGCAGGCGCTGGTGGATCAGGGCAATTCCGTCGT
GGTAATCGAGCACAATCTCGAAGTCATCAAGACGGCCGACTGGATCATCGATATTGGCCCCGAAGGCGGCACGGGCGGCG
GCGAAGTGGTGGCAACCGGAACGCCGGAAGACATCGTCAAGAACGAGCGCTCCTATACCGGCCATTTCCTGAAGGAACTT
CTAGAACGCCGGCCAGCCGGAAAACGCGAGGCTGCGGAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(133-239)

UvrA DNA-binding domain (UvrA_DNA-bind)

(311-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9UEG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.576

98.356

0.566
  uvrA Streptococcus pneumoniae TIGR4

57.576

98.356

0.566
  uvrA Streptococcus pneumoniae D39

57.576

98.356

0.566