Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ID616_RS29010 Genome accession   NZ_CP061723
Coordinates   6364934..6366424 (+) Length   496 a.a.
NCBI ID   WP_191087101.1    Uniprot ID   -
Organism   Pseudomonas putida strain ZXPA-20     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6359934..6371424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID616_RS28985 (ID616_28985) glnK 6360866..6361204 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  ID616_RS28990 (ID616_28990) - 6361566..6361832 (+) 267 WP_024717668.1 accessory factor UbiK family protein -
  ID616_RS28995 (ID616_28995) - 6361833..6362186 (+) 354 WP_016489776.1 gamma-glutamylcyclotransferase family protein -
  ID616_RS29000 (ID616_29000) - 6362224..6362652 (+) 429 WP_016489777.1 molybdopterin-binding protein -
  ID616_RS29005 (ID616_29005) - 6362658..6364676 (-) 2019 WP_191087100.1 DUF4034 domain-containing protein -
  ID616_RS29010 (ID616_29010) comM 6364934..6366424 (+) 1491 WP_191087101.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ID616_RS29015 (ID616_29015) - 6366624..6368411 (+) 1788 WP_095116218.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  ID616_RS29020 (ID616_29020) - 6368416..6368700 (-) 285 WP_024717670.1 HigA family addiction module antitoxin -
  ID616_RS29025 (ID616_29025) - 6368712..6368990 (-) 279 WP_080642829.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ID616_RS29030 (ID616_29030) - 6369485..6369643 (-) 159 Protein_5748 hydrolase -
  ID616_RS29035 (ID616_29035) - 6369766..6370677 (+) 912 WP_016489788.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52873.68 Da        Isoelectric Point: 7.8775

>NTDB_id=484409 ID616_RS29010 WP_191087101.1 6364934..6366424(+) (comM) [Pseudomonas putida strain ZXPA-20]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLSYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPTATLADMECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILNQRPYPDLSEVQGQLAAKRALMLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
EASADVAARVAKAREVQQRRQGCVNAFLDLDGLRRHCGLTAADQAWLEGACERLTLSLRAAHRLLKVARTLADLEGCEAI
GRPHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=484409 ID616_RS29010 WP_191087101.1 6364934..6366424(+) (comM) [Pseudomonas putida strain ZXPA-20]
ATGTCACTAGCCCTCGTCCACAGCCGCGCCCAGGTGGGTGTGCAGGCACCCGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCCATCTCACTCTGGTCGGCCTGCCAGAAACCACGGTCAAGGAAAGCAAGGACCGGGTACGCAGCGCCATCG
TCAACTCCGGGCTTAGCTACCCGCAGCGGCGCATTACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TACGACCTGGCCATTGCCCTGGGTATCCTCGCCGCAGATGGCCAAGTGCCGACTGCCACCCTGGCCGATATGGAATGCCT
GGGCGAACTGGCGCTTTCGGGGAAATTGCGCCCTGTCCAGGGCGTGCTACCTGCGGCCCTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTGCCACGGGAAAATGCCGAGGAAGCCAGCCTGGCAGGCGGGCTGGTGGTGTATGCGGTGGGCCACTTG
CTGGAGTTGGTCGCCCACCTGAACGGCCAGGTGCCATTGCCGCCGTACGCGGCCAATGGCTTGATCCTGAATCAACGTCC
CTACCCTGACCTGAGCGAGGTGCAGGGCCAACTGGCGGCCAAGCGCGCGTTGATGCTGGCGGCGGCTGGGGCGCACAACC
TGCTGTTCACCGGGCCACCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCAGGGCTGCTGCCACCGCTGGACGAG
CACGAGGCGCTCGAGGTGGCTGCCATTCAGTCGGTCAGCGGGCATACACCGCTGAGCAGTTGGCCGCAGCGACCGTTTCG
CCATCCCCACCACTCCGCATCCGGCCCGGCACTGGTTGGAGGCAGCAGCCGGCCGCAACCGGGCGAAATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTCGATGAACTGCCAGAGTTCGAGCGGCGTGTGCTGGAGGTGCTGCGCGAGCCGCTGGAGTCG
GGCGAGATCGTGATTGCCCGGGCACGCGACAAAGTGCGCTTTCCGGCGCGCTTTCAGCTGGTGGCGGCGATGAACCCATG
CCCTTGCGGCTACCTGGGCGACCCTACTGGCCGCTGCCGCTGCAGCACCGAGCAGATCGCGCGGTACCGCAACAAGCTAT
CAGGGCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTGGCTCGCGAAAGCACCACGCTGAACAATCAGCCCTGTGGT
GAAGCCAGTGCCGATGTGGCAGCCAGGGTAGCGAAGGCGCGGGAGGTACAGCAGCGCCGCCAAGGGTGCGTGAATGCGTT
TCTCGACCTCGACGGGTTGCGTCGCCATTGCGGATTGACGGCGGCGGACCAAGCTTGGCTGGAAGGGGCCTGCGAACGGT
TGACCTTGTCGTTGCGGGCAGCGCACCGGTTGTTGAAAGTGGCGCGGACACTGGCGGACCTCGAGGGTTGTGAGGCAATC
GGCCGGCCACATCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.96

99.798

0.558
  comM Haemophilus influenzae Rd KW20

55.4

100

0.558
  comM Vibrio cholerae strain A1552

55.556

99.798

0.554
  comM Glaesserella parasuis strain SC1401

53.892

100

0.544
  comM Legionella pneumophila str. Paris

49.699

100

0.5
  comM Legionella pneumophila strain ERS1305867

49.699

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.918

100

0.476