Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IDM46_RS01045 Genome accession   NZ_CP061714
Coordinates   228860..230374 (-) Length   504 a.a.
NCBI ID   WP_182823366.1    Uniprot ID   A0A7X0UVT9
Organism   Luteimonas sp. MC1825     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 223860..235374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IDM46_RS01030 (IDM46_01030) - 224767..225732 (-) 966 WP_223877989.1 LysR family transcriptional regulator -
  IDM46_RS01035 (IDM46_01035) aceB 225840..227471 (+) 1632 WP_185114574.1 malate synthase A -
  IDM46_RS01040 (IDM46_01040) aceA 227536..228831 (+) 1296 WP_182823368.1 isocitrate lyase -
  IDM46_RS01045 (IDM46_01045) comM 228860..230374 (-) 1515 WP_182823366.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IDM46_RS01050 (IDM46_01050) - 230385..230675 (-) 291 WP_182823364.1 accessory factor UbiK family protein -
  IDM46_RS01055 (IDM46_01055) - 230804..231142 (+) 339 WP_182823362.1 P-II family nitrogen regulator -
  IDM46_RS01060 (IDM46_01060) speE 231176..232024 (-) 849 WP_185114575.1 polyamine aminopropyltransferase -
  IDM46_RS01065 (IDM46_01065) speA 232181..234070 (+) 1890 WP_182823358.1 arginine decarboxylase -
  IDM46_RS01070 (IDM46_01070) - 234081..234536 (-) 456 WP_182823356.1 DMT family transporter -
  IDM46_RS01075 (IDM46_01075) - 234533..235291 (-) 759 WP_185114576.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 52937.92 Da        Isoelectric Point: 8.2078

>NTDB_id=484333 IDM46_RS01045 WP_182823366.1 228860..230374(-) (comM) [Luteimonas sp. MC1825]
MAGLAIVHGRARAGVRAPEVTIEVYMSGGLPRMSMVGLPQATVRESKDRVRAAIRCAQYEFPPRVTTVNLAPADLPKGGG
RFDLPIALGILAASDQLPRTALAGHEFLGELGLSGELRAIDGVLPAALACGEAGRVLVVPADNGAEAALARNVDVRVART
LSEVCAHLTGERSLPRACAAPVVAAMPPDLADVRGQLHARRALEVAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASEA
EALEAAAIASVSGRGIDPARWRQRPFRAPHHTASAVALVGGGSEPRPGEISLAHHGVLFLDELPEWSRQALEVLREPLES
GTVTVSRAARKSDFPARFQLVAAMNPCPCGWAGDVSGRCLCTADIVQRYRMRISGPLLDRIDLHVDVPRVAPAELRPDAA
GGECSAAVRDRVCAARDLQLERAGCLNAHLDQAGTAAHCRLAPRDQALLERAIDALQLSARAMHRILRVARTIADLAGSA
AIASEHLAEALGYRRVDRGVARAA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=484333 IDM46_RS01045 WP_182823366.1 228860..230374(-) (comM) [Luteimonas sp. MC1825]
ATGGCCGGGCTCGCCATCGTGCACGGGCGTGCACGCGCCGGCGTGCGCGCGCCGGAAGTCACCATCGAGGTGTACATGAG
CGGTGGCCTGCCGCGCATGAGCATGGTCGGCCTGCCACAGGCCACGGTGCGCGAATCCAAGGACCGCGTGCGCGCCGCCA
TCCGCTGCGCGCAGTACGAGTTCCCGCCGCGGGTCACCACCGTCAACCTCGCCCCGGCCGACCTGCCCAAGGGCGGCGGC
CGCTTCGACCTGCCGATCGCGCTCGGCATCCTCGCCGCCAGCGACCAGCTGCCACGCACCGCGCTGGCCGGGCACGAGTT
CCTCGGCGAACTCGGCCTCAGCGGCGAGTTGCGCGCGATCGACGGCGTGCTGCCCGCCGCACTCGCCTGCGGCGAGGCCG
GGCGCGTGCTGGTGGTGCCGGCCGACAATGGCGCCGAGGCCGCGCTGGCGCGCAACGTGGACGTGCGCGTGGCGCGCACC
CTGTCCGAAGTCTGCGCGCACCTCACTGGCGAGCGGTCGCTGCCGCGTGCCTGCGCCGCGCCGGTGGTCGCAGCCATGCC
GCCAGACCTCGCCGATGTGCGCGGCCAGCTGCACGCGCGGCGCGCACTCGAGGTCGCCGCGGCCGGTGGTCATCACCTCC
TGCTGGTGGGAAGCCCCGGATGTGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGGCTGCTGCCCGAGGCCAGCGAAGCC
GAAGCGCTCGAGGCCGCGGCCATCGCCTCGGTCAGCGGGCGCGGCATCGATCCCGCGCGCTGGCGGCAGCGCCCGTTCCG
CGCGCCGCACCACACCGCCAGCGCGGTCGCGCTGGTCGGCGGCGGCAGCGAACCGCGGCCGGGCGAGATCTCGCTGGCCC
ACCACGGCGTGCTGTTCCTGGACGAACTGCCCGAATGGAGCCGCCAGGCGCTGGAGGTCCTGCGCGAGCCGCTGGAATCG
GGAACGGTCACCGTGTCGCGCGCCGCGCGGAAGAGCGATTTCCCGGCGCGCTTCCAGCTGGTCGCGGCCATGAACCCCTG
CCCCTGCGGCTGGGCCGGCGATGTCTCCGGCCGCTGCCTGTGCACGGCGGATATCGTGCAGCGCTACCGCATGCGTATTT
CCGGCCCGCTGCTCGACCGCATCGACCTGCATGTCGACGTACCCCGCGTCGCACCCGCGGAACTGCGTCCCGACGCGGCC
GGAGGCGAGTGCAGCGCCGCGGTCCGTGACCGGGTATGTGCCGCGCGTGACCTGCAGCTCGAGCGCGCCGGTTGCCTCAA
CGCCCACCTCGACCAGGCCGGCACCGCCGCGCACTGCCGGCTGGCACCGCGCGACCAGGCGCTGCTGGAGCGGGCAATCG
ACGCGCTGCAGCTGTCGGCGCGCGCCATGCACCGCATCCTGCGCGTGGCGCGCACCATCGCCGACCTCGCCGGGAGCGCT
GCCATCGCCAGCGAACACCTGGCCGAAGCGCTCGGCTACCGGCGCGTGGATCGCGGCGTGGCCCGGGCCGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(22-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X0UVT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.819

98.81

0.542
  comM Vibrio campbellii strain DS40M4

53.815

98.81

0.532
  comM Haemophilus influenzae Rd KW20

51.697

99.405

0.514
  comM Glaesserella parasuis strain SC1401

51.089

100

0.512
  comM Legionella pneumophila str. Paris

50.605

98.413

0.498
  comM Legionella pneumophila strain ERS1305867

50.605

98.413

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.773

100

0.45