Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IC772_RS17720 Genome accession   NZ_CP061664
Coordinates   3821723..3823210 (+) Length   495 a.a.
NCBI ID   WP_191015993.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3816723..3828210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC772_RS17695 (IC772_17685) ribD 3817638..3818723 (-) 1086 WP_100290208.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  IC772_RS17700 (IC772_17690) nrdR 3818739..3819197 (-) 459 WP_004699275.1 transcriptional regulator NrdR -
  IC772_RS17705 (IC772_17695) - 3819358..3820755 (-) 1398 WP_019456996.1 ammonium transporter -
  IC772_RS17710 (IC772_17700) glnK 3820813..3821151 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  IC772_RS17715 (IC772_17705) - 3821430..3821657 (+) 228 WP_002048939.1 accessory factor UbiK family protein -
  IC772_RS17720 (IC772_17710) comM 3821723..3823210 (+) 1488 WP_191015993.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IC772_RS17725 (IC772_17715) - 3823225..3824658 (-) 1434 WP_191015994.1 PLP-dependent aminotransferase family protein -
  IC772_RS17730 (IC772_17720) - 3824771..3825547 (+) 777 WP_191015996.1 aldolase -
  IC772_RS17735 (IC772_17725) - 3825563..3826441 (+) 879 WP_191015997.1 dihydrodipicolinate synthase family protein -
  IC772_RS17740 (IC772_17730) - 3826484..3827308 (-) 825 WP_004699283.1 TorF family putative porin -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54499.36 Da        Isoelectric Point: 7.5370

>NTDB_id=483947 IC772_RS17720 WP_191015993.1 3821723..3823210(+) (comM) [Acinetobacter seifertii strain AS28]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPQDNSQDISHLPNLECYPVSHL
KEVCEHFLGNTKLSQVQSSSRSNAMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPTE
DSTTVRQRVISAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=483947 IC772_RS17720 WP_191015993.1 3821723..3823210(+) (comM) [Acinetobacter seifertii strain AS28]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGCTTGCATGCACCTCTCATTGAAGTAGAGGTGCACGTGAGTCA
AGGCTTACCCTCTCTAACGATTGTAGGGCTTGCTGAAGCAGCAGTCAGGGAGAGTAAGGACAGGGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAGTTTCCGACTAAACGGCTGACTATTAATCTTGCTCCCGCAGATTTGCCCAAAGATGGTTCACGT
TTAGATTTACCGATTGCATTAGGGATATTAATTGCCTCAGGTCAGCTTCCAGAGAACTGCACTGAAGACTTTGAATTTAT
TGGAGAGTTAGCACTAGATGGTCATGTAAGACCAGTTTCAGGCGCTTTAACTTTGGCAATGGCATGCCAGCAAGCCCAGC
ATAAAATTGTTTTACCCCAAGATAATAGTCAGGATATTAGTCACTTACCAAATCTTGAGTGTTATCCGGTGAGCCATTTA
AAAGAAGTTTGTGAACACTTTTTAGGAAATACTAAGCTATCTCAGGTGCAATCATCTTCCCGCTCAAATGCCATGCCGTA
TAAATTTGACCTTGCAGATGTAAAAGGCCAGCTACGCCCGCGCCGTGCACTGGAAATTGCAGCCGCTGGAGGGCACTCCT
TGCTCTTTAAAGGACCACCTGGTACAGGTAAGACTTTACTCGCCTCACGCCTTCCTTCAATTTTACCGCCACTATCTACT
CAAGAAACGCTTGAAGTTGCTAGTATTTATTCTATTTCAAATACGCCACATACTTTTGGACAGCGTCCTTTTCGTGCACC
ACATCATACTGCATCCGCAATTGCACTAGTTGGGGGCGGCTCACATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GTGTTCTATTCTTAGATGAATTGCCCGAGTTTGATCGTAAAGTATTAGAAGTTTTACGCCAGCCACTTGAGTCAAAAGAA
ATTATTATTTCACGAGCAGCGCGGCAAATTACCTATCCTGCCAACTTCCAACTGATTGCAGCCATGAACCCCTGCCCATG
TGGTTATGCATTTAATCAAGACAGTCGTTGTCAGTGCTCACCCGAGAGTATTAAACGTTATCAGAACCGTATATCGGGCC
CGTTACTTGACCGCATCGATTTACATATTGATGTGCCACCTTTAAAAGCTCAGGAACTGCAAGACCCAACGCCTACTGAA
GATTCTACAACTGTGCGACAACGTGTGATTTCTGCTTATGAACAACAAATGCAAAGACAAGATTGTTTGAATCAGGCGCT
TTCACCGAAACAACTTGAGCAATATGCTGTCCTTGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCGGCTCGTGCTTATCACCGTGTTTTACGAGTAGCGCGGACCATTGCCGATTTGGCTCAAAGTGAGATGATCCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.613

100

0.517
  comM Glaesserella parasuis strain SC1401

51

100

0.515
  comM Haemophilus influenzae Rd KW20

49.098

100

0.495
  comM Legionella pneumophila strain ERS1305867

48.996

100

0.493
  comM Legionella pneumophila str. Paris

48.996

100

0.493
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.012

100

0.477