Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IC781_RS01285 Genome accession   NZ_CP061626
Coordinates   279746..281167 (-) Length   473 a.a.
NCBI ID   WP_004699259.1    Uniprot ID   N8QZB6
Organism   Acinetobacter seifertii strain AS48     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 274746..286167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC781_RS01270 (IC781_01270) lptG 275799..276869 (+) 1071 WP_004699266.1 LPS export ABC transporter permease LptG -
  IC781_RS01275 (IC781_01275) gpmI 276995..278542 (+) 1548 WP_004699264.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  IC781_RS01280 (IC781_01280) - 278558..279742 (+) 1185 WP_004699262.1 S41 family peptidase -
  IC781_RS01285 (IC781_01285) pilR 279746..281167 (-) 1422 WP_004699259.1 sigma-54-dependent transcriptional regulator Regulator
  IC781_RS01290 (IC781_01290) pilS 281192..282760 (-) 1569 WP_004699258.1 sensor histidine kinase Regulator
  IC781_RS01295 (IC781_01295) - 282771..283406 (-) 636 WP_004699257.1 response regulator -
  IC781_RS01300 (IC781_01300) pbpG 283618..284664 (+) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IC781_RS01305 (IC781_01305) thrC 284773..285912 (-) 1140 WP_002048893.1 threonine synthase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53211.39 Da        Isoelectric Point: 6.5064

>NTDB_id=483630 IC781_RS01285 WP_004699259.1 279746..281167(-) (pilR) [Acinetobacter seifertii strain AS48]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVNKPINQVHLDQLLQKALNRQQTDQDFAETALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPLGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPPKQLSDAAETYLLQQHFPGNVRELRNMIERAITLSDDAQIDVPHLHPAPLRANISSSVPLVSQT
IQNNVTTPQVVKKLPTEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=483630 IC781_RS01285 WP_004699259.1 279746..281167(-) (pilR) [Acinetobacter seifertii strain AS48]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGACGCATGCT
TAACCGATTTAAATCTACCTGATGGTAGCGGGTTAGACTTAGTCAAACATGTCTCTCAAAACTACCCCAACACCCCAATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCTGCATTAAAAGCAGGTGCTTTTGATTTTGTGAATAAACC
TATTAACCAAGTCCATTTAGATCAGTTATTGCAAAAGGCGCTCAATCGGCAACAAACAGATCAAGACTTTGCAGAAACAG
CGCTAGAAAATAAATTATTAATCGGCCGTTCTCTACCTATTCAACAATTACGCATTGCAATTAAAAAAATTGCTCGCTCT
CAAGCACCTGTATTTGTTACAGGTGAGTCAGGAACAGGTAAAGAAGTAGTTGCCAACCTAGTTCATCGGTTAAGTAACCG
TAGTGAAGGTCCTTTTATTGCAATTAACTGCGGTGCCATTCCAACTGAACTCATGGAAAGTGAGCTGTTTGGACATAAAA
AAGGCAGTTTTACTGGGGCAACTCAAGATAAACAGGGTCTGATTTTATCGGCTCACGGCGGTAGTTTATTTTTAGATGAA
ATTGCCGAATTACCACTTAGTATGCAAGTCAAACTACTGCGTGCGGTACAGGAAAAAAAGATCCGTCCTCTCGGTTCCGA
TCAGGAAATTGATGTTGATTTCCGTGTCATTAGTGCGAGTCATCAAGACTTGGATTTATTGGTTAGACAAGGCAAATTCC
GTCAGGATTTGTTTTTCCGTATCCATGTTATGGACTTGATGTTACCACCGCTACGAGAACGTGGCGAAGATGTCCTTTTA
CTTGCAAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACACCACCCAAACAATTAAGCGACGCAGCCGAGACTTA
TCTCTTACAGCAACACTTTCCTGGCAATGTTCGCGAATTAAGAAACATGATTGAGCGAGCAATCACCCTAAGTGACGATG
CTCAAATTGATGTACCACACTTACATCCAGCACCATTAAGAGCAAATATCTCTAGCTCAGTACCATTGGTATCTCAGACA
ATACAAAATAACGTGACAACGCCTCAAGTTGTAAAAAAATTGCCAACTGAAGGATTGGAGCGTTATTTAGAGAACATTGA
AAAAGATATTCTGCTCAATGCACTCAATATGACCCATTGGAACAGAACTTTAGCAGCAAAAAAACTAGGAATGACGTTTC
GTTCTTTACGTTATCGTTTGAAAAAATTTGGCTTAGACACCGAGACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8QZB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

93.446

100

0.934
  pilR Pseudomonas aeruginosa PAK

50.327

97.04

0.488