Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IC796_RS01685 Genome accession   NZ_CP061561
Coordinates   353534..355645 (+) Length   703 a.a.
NCBI ID   WP_151682780.1    Uniprot ID   A0A7H2PS77
Organism   Acinetobacter seifertii strain AS73     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348534..360645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC796_RS01665 (IC796_01665) pilM 350495..351553 (+) 1059 WP_191036737.1 pilus assembly protein PilM Machinery gene
  IC796_RS01670 (IC796_01670) pilN 351553..352197 (+) 645 WP_151682783.1 PilN domain-containing protein Machinery gene
  IC796_RS01675 (IC796_01675) pilO 352194..352934 (+) 741 WP_151682782.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC796_RS01680 (IC796_01680) pilP 352945..353472 (+) 528 WP_151682781.1 pilus assembly protein PilP Machinery gene
  IC796_RS01685 (IC796_01685) pilQ 353534..355645 (+) 2112 WP_151682780.1 type IV pilus secretin PilQ family protein Machinery gene
  IC796_RS01690 (IC796_01690) aroK 355657..356226 (+) 570 WP_151682779.1 shikimate kinase AroK -
  IC796_RS01695 (IC796_01695) aroB 356255..357253 (+) 999 WP_223850132.1 3-dehydroquinate synthase -
  IC796_RS01700 (IC796_01700) - 357352..358226 (+) 875 Protein_329 hypothetical protein -

Sequence

Protein


Download         Length: 703 a.a.        Molecular weight: 76305.85 Da        Isoelectric Point: 6.7714

>NTDB_id=483195 IC796_RS01685 WP_151682780.1 353534..355645(+) (pilQ) [Acinetobacter seifertii strain AS73]
MNQVFRQFSMGVVAIAIMQAASAQVSMTNIVPTQIAGQGTELRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKQPKI
AVATNEASSVDVTSDEQRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTTKKPIPVAATQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTAVDVQQQGSKVVIRTLGTKIPTHLTRRLNVNDFATPVSIIDAYNDKDAGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKSVSSSYKTPSYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDQAKALAQTIKLAPIQTDYIRLSYAKAVDVLKLIEDTRDTKGSATNHTATSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITKNNDLLVG
GSEKTLWDLRTPDSSGKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTADKQTA
KVATGQQVPYLMTTTSGAGTTATTSFKDALLSLDVTPNITPDGKIQMKLDISKDSIAGEAPNGELILNKNNINTNVLVDN
GETVILGGVFEQTTKNSQTKVPFFGDIPLVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2112 bp        

>NTDB_id=483195 IC796_RS01685 WP_151682780.1 353534..355645(+) (pilQ) [Acinetobacter seifertii strain AS73]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGTTGTAGCGATTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAACGCAAATTGCAGGTCAGGGTACAGAACTTAGAGTCATGTTTAATGGTTTGCCTCCACAGCCAC
AAGCTTACCAACTTGAAAACCCTTCGCGTTTAATACTAGATTTTGATAAGGCACAACAAAGTTTAAAGCAGCCTAAAATA
GCTGTTGCAACTAATGAAGCAAGTTCAGTTGATGTGACTTCAGATGAACAGCGTTCTCGTTTAACCGTAAATCTAAAAGA
TGCAGGTGCTTTTACAACACGTGTGGAAGGTAATACTTTCATTCTAAAAATTAACTCAGCTCAAACAACTAAGAAGCCGA
TACCAGTAGCTGCTACACAACCACAAGGTGTTTCAAATATTGGTTTTCAACGTGGTAGTCAGGGAGAGGGTTTAGTTGTT
GTAGATCTTCTGGGAAGTAATACAGCTGTAGATGTTCAACAACAAGGTAGTAAAGTTGTTATAAGAACATTAGGCACAAA
AATTCCGACACATTTAACGCGCCGCTTAAATGTAAATGATTTTGCAACGCCAGTTTCAATTATCGATGCTTATAATGATA
AAGATGCTGGTGTAATTACGATTCAGTCATCTGGTAGCTATGAATATATGGCGTATCAGGCTGAAAATAAGCTGACCATT
AGTCTGAAACGTCCTCAAGATAAAAGTGTATCGTCTTCATATAAGACACCAAGTTATTCTGGCAATAAGCTTTCATTAGA
CTTCCAAGACATTGAAGTGCGTCGTGTTCTACAGTTGCTTGCTGATTTTACAGGAATCAACATGGTGGCAGCAGATAGCG
TGCAAGGTAATATCACACTACGTTTAAAAGATGTACCTTGGGATCAAGCCCTTGATATTATTTTAAAGACAAAAAATCTT
GATAAACGCCGTAATGGGAATGTGATCTGGATTGCGCCAGTTGCTGAGTTAATTAAAGCTGAAGATGATCAGGCAAAAGC
CTTAGCTCAAACGATTAAGTTGGCTCCAATCCAAACTGATTATATCCGCTTGAGTTATGCGAAAGCAGTTGATGTGCTTA
AGTTGATTGAAGATACTCGTGATACAAAAGGATCTGCTACGAATCATACTGCCACTTCAGATTCTCTGGCTTTAGAGAGT
TTATTGAGCTCACGTGGTAGCGCGGTTGCGGATACCCGAACTAATACCTTGATTGTAAATGATACAGCACAGAATATTGA
TAAAGTTCGTAAAATGATTGACTTGCTTGATGTACAAGTGAAACAAGTCATGGTTGAAGCACGTATTGTAAGAGCCTCTA
CCTCATTTACAAAAGAACTTGGGGTGAAATGGGGTATTCTTTCACAAGGAATTACTAAGAATAATGATTTATTGGTTGGG
GGGAGTGAAAAGACTTTATGGGATCTAAGAACTCCTGATAGTAGTGGAAAATACACAATTGAACGACCAGATAACCTAAA
CGTCGATTTAGGAGTTTCTAATCCAGCGGGAAGTATTGCTTTTGGTCTTATCAGTATGTCTGACTTTATGTTAGATTTAG
AGTTATCTGCTTTACAGGCTGATGGCTATGGTGAAGTGATTTCAACGCCTAAAGTGATGACGGCCGATAAGCAAACTGCA
AAAGTTGCAACAGGTCAACAAGTTCCTTATCTAATGACAACGACCTCTGGTGCTGGTACTACTGCAACAACATCATTCAA
AGATGCGCTCTTGAGTCTAGATGTTACTCCGAACATTACACCTGATGGCAAGATACAAATGAAGTTAGATATTTCTAAAG
ATTCTATAGCTGGTGAAGCACCAAATGGTGAATTAATTCTGAATAAGAATAATATCAATACCAATGTATTGGTGGACAAT
GGAGAAACTGTCATTTTGGGTGGTGTATTCGAGCAAACAACAAAGAATTCTCAAACTAAAGTTCCTTTCTTTGGGGATAT
TCCTTTGGTTGGGCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAAGAGTTACTGATTTTCGTAACACCACGAA
TTGTTAATGACACTTTGGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

AMIN domain (AMIN)

(39-121)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(537-695)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2PS77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

85.853

100

0.881
  pilQ Acinetobacter baumannii strain A118

85.714

100

0.879
  comQ Acinetobacter baylyi ADP1

73.625

100

0.743
  pilQ Pseudomonas aeruginosa PAK

38.472

100

0.408