Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IC797_RS01690 Genome accession   NZ_CP061556
Coordinates   354560..356686 (+) Length   708 a.a.
NCBI ID   WP_191105887.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS74     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 349560..361686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC797_RS01670 (IC797_01670) pilM 351521..352579 (+) 1059 WP_039251099.1 pilus assembly protein PilM Machinery gene
  IC797_RS01675 (IC797_01675) pilN 352579..353223 (+) 645 WP_077163636.1 PilN domain-containing protein Machinery gene
  IC797_RS01680 (IC797_01680) pilO 353220..353960 (+) 741 WP_191012245.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC797_RS01685 (IC797_01685) pilP 353971..354498 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC797_RS01690 (IC797_01690) pilQ 354560..356686 (+) 2127 WP_191105887.1 type IV pilus secretin PilQ family protein Machinery gene
  IC797_RS01695 (IC797_01695) aroK 356698..357267 (+) 570 WP_151682779.1 shikimate kinase AroK -
  IC797_RS01700 (IC797_01700) aroB 357296..358378 (+) 1083 WP_191012243.1 3-dehydroquinate synthase -
  IC797_RS01705 (IC797_01705) - 358394..359268 (+) 875 Protein_329 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76545.93 Da        Isoelectric Point: 6.7710

>NTDB_id=483152 IC797_RS01690 WP_191105887.1 354560..356686(+) (pilQ) [Acinetobacter seifertii strain AS74]
MNQVFRQFSMGAVAIAIMQAASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKQSKI
AVATNEASSVDVTSDDVRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTANKPIPVAAAQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTLGTKIPTHLARRLNVNDFATPVSSIDAYNDKDAGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKSTSASYKVPSYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDEQAKALAQTIKLAPIQTDYIRLSYAKAIDVLKIIEDSRDGKGAAANHTANSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIELLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVG
GSETTLWNLRDPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQTAKVATGQQVPYQTTTNSGAGSTATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGAAPNGELILNKNNINTN
VLVDNGETVILGGVFEQTTTNTQTKVPFFGDIPLVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=483152 IC797_RS01690 WP_191105887.1 354560..356686(+) (pilQ) [Acinetobacter seifertii strain AS74]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCGATTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAACGCAAATTGCAGGTCAGGGTACAGAAATTAGAGTCATGTTTAATGGTTTGCCTCCACAGCCAC
AAGCTTACCAACTTGAAAATCCTTCGCGTTTAATACTAGATTTTGATAAGGCGCAACAAAGTTTAAAGCAGTCTAAAATT
GCTGTTGCAACGAATGAAGCAAGTTCCGTTGATGTGACTTCAGATGATGTACGTTCACGCTTAACCGTAAATCTAAAAGA
TGCTGGTGCTTTTACAACCCGCGTGGAAGGCAATACTTTTATCCTAAAAATTAATTCAGCTCAAACAGCGAATAAGCCGA
TACCAGTAGCTGCCGCACAACCACAAGGTGTGTCAAATATTGGTTTTCAGCGTGGTAGTCAGGGGGAAGGTTTAGTTGTT
GTCGATCTTTTGGGAAGTAATACGCCTGTAGATGTTCAACAACAAGGCAGTAAAGTTGTTATAAGAACATTGGGCACAAA
AATTCCGACACATTTAGCACGTCGTTTAAATGTAAATGATTTTGCAACGCCAGTTTCAAGTATAGATGCTTACAATGATA
AAGATGCTGGTGTAATCACAATTCAGTCATCTGGTAGCTATGAATATATGGCGTATCAGGCTGAAAATAAGCTCACTATT
AGTTTGAAACGTCCACAAGACAAAAGTACATCGGCTTCGTATAAAGTACCAAGTTATTCTGGTAATAAGCTTTCGTTAGA
TTTTCAAGATATTGAAGTACGCCGTGTTCTACAATTGTTGGCTGATTTTACAGGCATCAATATGGTAGCTGCTGATAGTG
TGCAAGGTAATATCACGCTACGCTTGAAAGATGTACCTTGGGATCAAGCACTTGATATTATTTTAAAGACGAAAAATCTT
GATAAAAGACGTAACGGGAATGTGATTTGGATTGCTCCAGTTGCTGAGTTAATCAAAGCAGAGGATGAACAGGCTAAAGC
ATTAGCACAAACAATTAAGTTGGCTCCAATTCAAACAGATTATATCCGCTTGAGTTATGCGAAAGCGATTGATGTACTAA
AAATAATCGAAGATTCTCGAGATGGAAAAGGAGCAGCCGCAAATCATACCGCAAACTCTGATTCTCTTGCGTTGGAGAGT
TTATTAAGTTCACGTGGTAGTGCTGTTGCTGATACCCGGACTAATACTTTGATTGTAAATGATACAGCACAAAATATTGA
TAAAGTTCGTAAAATGATTGAACTACTTGATGTGCAAGTTAAACAGGTGATGGTTGAAGCACGTATTGTGAGAGCCTCTA
CGTCATTTACCAAAGAACTTGGAGTGAAGTGGGGTATTCTTTCACAAGGTATTACTAATAATAAAAATTTATTGGTTGGT
GGTAGTGAAACAACTTTATGGAATTTACGTGACCCTAAAAAAGATGAAACTACTGGAGGCTATAAATATACCATTGAACG
TCCAGATAACTTAAACGTTGATTTGGGAGTCTCGAATCCGGCGGGAAGTATTGCCTTTGGTCTTATCAGTATGTCTGACT
TTATGTTAGATCTTGAACTCTCAGCTTTACAGGCTGATGGTTATGGTGAGGTGATTTCAACCCCTAAAGTCATGACTGCC
GATAAGCAAACTGCGAAAGTTGCAACGGGTCAACAAGTTCCATATCAGACTACAACGAATTCTGGTGCGGGTTCAACAGC
AACAACATCATTTAAAGATGCTCTTTTAAGTCTTGATGTTACGCCTAGCATTACGCCTGACGGTAAAATTCAAATGAAAT
TAGATATTTCTAAGGACTCTGTGGCAGGTGCAGCACCAAATGGTGAGTTAATTCTGAATAAGAATAATATTAATACCAAT
GTGCTGGTTGATAATGGAGAAACCGTCATTTTAGGTGGTGTATTCGAGCAAACAACGACAAATACCCAAACTAAAGTTCC
TTTCTTTGGGGATATTCCTTTGGTTGGGCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAAGAGTTACTGATTT
TCGTAACACCACGAATTGTTAATGACACTTTGGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

Bacterial type II and III secretion system protein (Secretin)

(542-700)

Secretin and TonB N terminus short domain (STN)

(291-333)

AMIN domain (AMIN)

(39-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

88.627

100

0.903
  pilQ Acinetobacter baumannii strain A118

88.488

100

0.901
  comQ Acinetobacter baylyi ADP1

73.007

100

0.737
  pilQ Pseudomonas aeruginosa PAK

39.972

99.294

0.397