Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IC797_RS01685 Genome accession   NZ_CP061556
Coordinates   353971..354498 (+) Length   175 a.a.
NCBI ID   WP_004705193.1    Uniprot ID   N8SH39
Organism   Acinetobacter seifertii strain AS74     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348971..359498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC797_RS01670 (IC797_01670) pilM 351521..352579 (+) 1059 WP_039251099.1 pilus assembly protein PilM Machinery gene
  IC797_RS01675 (IC797_01675) pilN 352579..353223 (+) 645 WP_077163636.1 PilN domain-containing protein Machinery gene
  IC797_RS01680 (IC797_01680) pilO 353220..353960 (+) 741 WP_191012245.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC797_RS01685 (IC797_01685) pilP 353971..354498 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC797_RS01690 (IC797_01690) pilQ 354560..356686 (+) 2127 WP_191105887.1 type IV pilus secretin PilQ family protein Machinery gene
  IC797_RS01695 (IC797_01695) aroK 356698..357267 (+) 570 WP_151682779.1 shikimate kinase AroK -
  IC797_RS01700 (IC797_01700) aroB 357296..358378 (+) 1083 WP_191012243.1 3-dehydroquinate synthase -
  IC797_RS01705 (IC797_01705) - 358394..359268 (+) 875 Protein_329 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19340.53 Da        Isoelectric Point: 9.4007

>NTDB_id=483151 IC797_RS01685 WP_004705193.1 353971..354498(+) (pilP) [Acinetobacter seifertii strain AS74]
MKIKQITLYILACAALVGCDSRIDAVNQQMANIRNQPPLAIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRTPQPLESYALEALSMKGSMRNSRGQILALIQTPDHQVERVQVGNYMGMNQGRITQISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=483151 IC797_RS01685 WP_004705193.1 353971..354498(+) (pilP) [Acinetobacter seifertii strain AS74]
ATGAAAATTAAGCAAATTACTCTTTATATTTTGGCTTGTGCTGCGCTTGTAGGATGTGATTCAAGAATTGATGCAGTCAA
TCAGCAAATGGCAAATATCCGTAATCAACCGCCGCTAGCTATTGAACCAGCACCTATTTTTACTCCTGTACCACAATTTA
ATTATGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGCTCACTGGCTGCTGAACTCAAAATTATGGCTGGAAAACGT
GTTTATCCAAATTTCTCACGTACGCCACAGCCATTAGAAAGTTATGCACTTGAGGCTTTAAGTATGAAAGGAAGCATGCG
CAATAGCCGTGGTCAAATATTAGCTCTCATCCAGACGCCAGATCATCAAGTTGAACGGGTACAAGTGGGCAATTATATGG
GCATGAATCAGGGCCGTATTACCCAGATTAGCCCGACTCAGATTGATTTGGTTGAGATTGTGCCAGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8SH39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

94.286

100

0.943
  comL Acinetobacter baylyi ADP1

70.69

99.429

0.703