Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IC797_RS01675 Genome accession   NZ_CP061556
Coordinates   352579..353223 (+) Length   214 a.a.
NCBI ID   WP_077163636.1    Uniprot ID   A0A2M8MMB9
Organism   Acinetobacter seifertii strain AS74     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347579..358223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC797_RS01655 (IC797_01655) - 347628..347960 (+) 333 WP_077163639.1 hypothetical protein -
  IC797_RS01660 (IC797_01660) - 347963..348787 (+) 825 WP_191105886.1 putative RNA methyltransferase -
  IC797_RS01665 (IC797_01665) ponA 348805..351359 (-) 2555 Protein_321 penicillin-binding protein PBP1a -
  IC797_RS01670 (IC797_01670) pilM 351521..352579 (+) 1059 WP_039251099.1 pilus assembly protein PilM Machinery gene
  IC797_RS01675 (IC797_01675) pilN 352579..353223 (+) 645 WP_077163636.1 PilN domain-containing protein Machinery gene
  IC797_RS01680 (IC797_01680) pilO 353220..353960 (+) 741 WP_191012245.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC797_RS01685 (IC797_01685) pilP 353971..354498 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC797_RS01690 (IC797_01690) pilQ 354560..356686 (+) 2127 WP_191105887.1 type IV pilus secretin PilQ family protein Machinery gene
  IC797_RS01695 (IC797_01695) aroK 356698..357267 (+) 570 WP_151682779.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24113.45 Da        Isoelectric Point: 5.1326

>NTDB_id=483149 IC797_RS01675 WP_077163636.1 352579..353223(+) (pilN) [Acinetobacter seifertii strain AS74]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLITSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQDLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEDKKDKAASSLLPRVEDNYGSFVVTVDLGEMGVTTADNNADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=483149 IC797_RS01675 WP_077163636.1 352579..353223(+) (pilN) [Acinetobacter seifertii strain AS74]
ATGGCAACAATTAATTTACTACCTTGGCGTGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGCTTTGG
GGTGGTTGTGTTAGGAATTACAACCGTATTTGGGGGGTGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ATCAACTTATTACAAGTACTAATCAAAACCTTGATCAGCAATTAAAAGCATTAAATGGTTTACAAGAACAACGTGATGCC
ATCATTGAGCGTATGAAATTGATTCAAGATTTACAGAGTCAGCGTCCAGTCGTGGTAAGACTGGTTGATGAGTTAGTAAG
AGTCACGCCACCTGCAATGTATTTAACGAAATTTAGCCGAACTGGGGATAAATTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACGGTAGCTGAACTACTGCGTAATCTTGAAGCATCTCCTTGGTATCGAAATGCTTTTATGAACTCTTTCTTGGCT
ACTGAAGATAAAAAAGATAAGGCAGCAAGTTCTCTTCTTCCTAGGGTAGAAGATAATTACGGTAGTTTTGTTGTGACTGT
CGATTTAGGGGAAATGGGCGTGACCACAGCTGATAATAATGCTGATAAACCAGCCGTAGCTAAAGATACGGGGGCAGCAA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2M8MMB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

92.056

100

0.921
  comN Acinetobacter baylyi ADP1

70.616

98.598

0.696