Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IC797_RS01055 Genome accession   NZ_CP061556
Coordinates   232315..232902 (+) Length   195 a.a.
NCBI ID   WP_004705007.1    Uniprot ID   N8SBP5
Organism   Acinetobacter seifertii strain AS74     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 227315..237902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC797_RS01030 (IC797_01030) - 227389..228195 (-) 807 WP_004884868.1 SDR family oxidoreductase -
  IC797_RS01035 (IC797_01035) - 228299..228669 (-) 371 Protein_202 MerR family transcriptional regulator -
  IC797_RS01040 (IC797_01040) tenA 228734..229408 (-) 675 WP_191105849.1 thiaminase II -
  IC797_RS01045 (IC797_01045) - 229671..230753 (+) 1083 WP_004705003.1 DUF475 domain-containing protein -
  IC797_RS01050 (IC797_01050) - 230900..232264 (+) 1365 WP_004705005.1 MFS transporter -
  IC797_RS01055 (IC797_01055) ssb 232315..232902 (+) 588 WP_004705007.1 single-stranded DNA-binding protein Machinery gene
  IC797_RS01060 (IC797_01060) - 232943..233266 (-) 324 WP_049064733.1 AzlD domain-containing protein -
  IC797_RS01065 (IC797_01065) - 233263..233958 (-) 696 WP_134262574.1 AzlC family ABC transporter permease -
  IC797_RS01070 (IC797_01070) - 234027..234575 (+) 549 WP_191105850.1 helix-turn-helix domain-containing protein -
  IC797_RS01075 (IC797_01075) - 234881..236323 (+) 1443 WP_019458489.1 amino acid permease -
  IC797_RS01080 (IC797_01080) - 236389..237887 (-) 1499 Protein_211 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21137.90 Da        Isoelectric Point: 6.4822

>NTDB_id=483147 IC797_RS01055 WP_004705007.1 232315..232902(+) (ssb) [Acinetobacter seifertii strain AS74]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNNQGGGYGQNNGGGYGGQG
GFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=483147 IC797_RS01055 WP_004705007.1 232315..232902(+) (ssb) [Acinetobacter seifertii strain AS74]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCGATCGCGACAAGTGAATCTTGGACTGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTACATTGAAGGT
TCATTACGTACACGTCAATGGACAGATCAAAATGGCCAAGAGCGTTATACGACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGCGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTGGCCAAGGT
GGTTTCGGTAATGGCGGAAACAGCCCGCAAGGTGGTGGATTTGCTCCTAAAGCGCCGCAACAACCAGCGTCTGCACCAGC
TGATTTAGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8SBP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.691

100

0.549
  ssb Vibrio cholerae strain A1552

44.335

100

0.462
  ssb Neisseria meningitidis MC58

37.879

100

0.385
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385