Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   J7T60_RS06690 Genome accession   NZ_CP072436
Coordinates   1279074..1281044 (-) Length   656 a.a.
NCBI ID   WP_372433410.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24735     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1274074..1286044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T60_RS06670 (J7T60_06615) - 1274577..1275506 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein -
  J7T60_RS06675 (J7T60_06620) amiE 1275499..1276584 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  J7T60_RS06680 (J7T60_06625) amiD 1276594..1277520 (-) 927 WP_271295774.1 oligopeptide ABC transporter permease OppC Regulator
  J7T60_RS06685 (J7T60_06630) amiC 1277520..1279013 (-) 1494 WP_064355564.1 ABC transporter permease Regulator
  J7T60_RS06690 (J7T60_06635) amiA3 1279074..1281044 (-) 1971 WP_372433410.1 peptide ABC transporter substrate-binding protein Regulator
  J7T60_RS06695 (J7T60_06640) - 1281280..1281470 (-) 191 Protein_1264 IS3 family transposase -
  J7T60_RS06700 - 1281464..1281874 (-) 411 Protein_1265 ATP-binding cassette domain-containing protein -
  J7T60_RS06705 (J7T60_06655) - 1281906..1282220 (-) 315 Protein_1266 TatD family hydrolase -
  J7T60_RS06710 (J7T60_06660) - 1282568..1283773 (+) 1206 WP_372433411.1 OFA family MFS transporter -
  J7T60_RS06715 (J7T60_06665) - 1283820..1285172 (-) 1353 Protein_1268 IS3 family transposase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72276.31 Da        Isoelectric Point: 5.1026

>NTDB_id=482899 J7T60_RS06690 WP_372433410.1 1279074..1281044(-) (amiA3) [Streptococcus thermophilus strain S24735]
MKKSKWLALAGVALLGVGVLAACSSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKSVVTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAVDSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVGVK
AIDDYTLQYTLKKPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWDKK
NVHFDAIKFSYYDGSDQDALVRGFTDGAYNFARVFPTSSNYASVEKKYKDNIFYTAPGASTSAIGINIDRQSYKYTAKKT
DSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLAVRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
ADSQDGLYNAEKAKTEFAKAKDALQADGVQFPIHLDLPVDQSSKLNVAQVQSLKQTIEKSLGSENVVIDINQLSSDDLEN
ATLNAANAAAEDWDISNSVAWAPDYQDPSTYLDIFKTTSSENTKDFMGYDDPNNAAAAQVGLKDYDALLNSAASETSDLN
VRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASIQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KESNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=482899 J7T60_RS06690 WP_372433410.1 1279074..1281044(-) (amiA3) [Streptococcus thermophilus strain S24735]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATACGGGAC
CTACAAAATCTGTTGTGACAAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGATTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGTGGATTCCAAAGCAGGTGGTATCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGTGTCAAG
GCAATTGATGACTATACTTTGCAGTACACGCTTAAGAAACCAGAACCATACTGGAACTCTAAGACAACTTATAGTTTGCT
TTTCCCAGTAAATGAGGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTCTCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCACTGATGG
TGCTTATAATTTTGCTCGTGTCTTTCCAACAAGTTCAAACTATGCTTCTGTAGAAAAAAAATATAAAGATAATATTTTTT
ACACAGCACCAGGTGCGTCTACATCAGCTATTGGTATTAATATTGACCGTCAAAGTTACAAGTATACAGCCAAAAAGACG
GATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGACCGTAA
GGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGCTGTTCGTAACCTCTTTGTGCCTTCTGATTTTGTGA
GTGCAGGTGATAAGACCTTCGGAGATCTTGTAACAGAGAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTGAATTTT
GCTGATAGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCCAAGCAGA
TGGTGTTCAATTCCCAATTCATTTGGACCTTCCAGTTGACCAAAGCTCTAAACTTAATGTTGCCCAAGTCCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGTAGCGAAAATGTTGTTATAGATATTAACCAATTGTCATCTGATGATTTGGAAAAT
GCAACACTTAATGCAGCCAACGCAGCAGCAGAAGACTGGGATATTTCAAATAGTGTCGCTTGGGCGCCAGATTACCAAGA
TCCATCAACCTACCTTGATATCTTTAAGACAACTTCAAGTGAAAACACTAAGGATTTCATGGGTTATGATGATCCAAATA
ATGCGGCAGCAGCCCAAGTGGGACTTAAAGACTATGATGCCTTGCTGAATTCTGCAGCTTCAGAAACAAGTGACCTTAAT
GTTCGTTACGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGGTAATGG
TGCGGCACCAGTTATCTCACGCTTGACACCGTTTACCGGTGCTAGCATCCAGGTGGGTGATAAAAACTCATCAGACTACT
TCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

98.478

100

0.986
  amiA3 Streptococcus thermophilus LMG 18311

98.174

100

0.983
  amiA Streptococcus salivarius strain HSISS4

91.159

100

0.912