Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   J7T60_RS06685 Genome accession   NZ_CP072436
Coordinates   1277520..1279013 (-) Length   497 a.a.
NCBI ID   WP_064355564.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24735     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1272520..1284013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T60_RS06655 (J7T60_06600) - 1272650..1273027 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  J7T60_RS06660 (J7T60_06605) - 1273032..1273730 (+) 699 WP_372433409.1 ABC transporter ATP-binding protein -
  J7T60_RS06665 (J7T60_06610) - 1273742..1274527 (+) 786 WP_011681414.1 hypothetical protein -
  J7T60_RS06670 (J7T60_06615) - 1274577..1275506 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein -
  J7T60_RS06675 (J7T60_06620) amiE 1275499..1276584 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  J7T60_RS06680 (J7T60_06625) amiD 1276594..1277520 (-) 927 WP_271295774.1 oligopeptide ABC transporter permease OppC Regulator
  J7T60_RS06685 (J7T60_06630) amiC 1277520..1279013 (-) 1494 WP_064355564.1 ABC transporter permease Regulator
  J7T60_RS06690 (J7T60_06635) amiA3 1279074..1281044 (-) 1971 WP_372433410.1 peptide ABC transporter substrate-binding protein Regulator
  J7T60_RS06695 (J7T60_06640) - 1281280..1281470 (-) 191 Protein_1264 IS3 family transposase -
  J7T60_RS06700 - 1281464..1281874 (-) 411 Protein_1265 ATP-binding cassette domain-containing protein -
  J7T60_RS06705 (J7T60_06655) - 1281906..1282220 (-) 315 Protein_1266 TatD family hydrolase -
  J7T60_RS06710 (J7T60_06660) - 1282568..1283773 (+) 1206 WP_372433411.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55866.73 Da        Isoelectric Point: 10.0536

>NTDB_id=482898 J7T60_RS06685 WP_064355564.1 1277520..1279013(-) (amiC) [Streptococcus thermophilus strain S24735]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKINYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVLTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGFPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=482898 J7T60_RS06685 WP_064355564.1 1277520..1279013(-) (amiC) [Streptococcus thermophilus strain S24735]
ATGAAAAGATATATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
TAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCGGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
ATCTACTAAGAGTCGTTATCAGTACCCATCAATGGTGACAAGCTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCCTTAGCGATTCCATTGGGATCTTACATGGCACGCTTTAAAAATACACTCTTTGATAGTGTGTTAACAGGCGTCTTG
ACTTTCTTGCTTTCGCTACCGACGATTGCCTTGGTATATATCATTCGCTTGATTGGTTCTGAGATTGGTCTTCCGGATTC
TTTTCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCACGTGCTAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGTTCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

96.579

100

0.966
  amiC Streptococcus thermophilus LMG 18311

96.579

100

0.966
  amiC Streptococcus salivarius strain HSISS4

95.976

100

0.96