Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PPUBIRD1_RS25390 Genome accession   NC_017530
Coordinates   5628942..5630432 (+) Length   496 a.a.
NCBI ID   WP_041167208.1    Uniprot ID   -
Organism   Pseudomonas putida BIRD-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5623942..5635432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPUBIRD1_RS25370 (PPUBIRD1_5029) glnK 5625161..5625499 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PPUBIRD1_RS25375 (PPUBIRD1_5030) - 5626036..5626302 (+) 267 WP_014592818.1 accessory factor UbiK family protein -
  PPUBIRD1_RS25380 - 5626303..5626656 (+) 354 WP_041167112.1 gamma-glutamylcyclotransferase family protein -
  PPUBIRD1_RS25385 (PPUBIRD1_5032) - 5626610..5628679 (-) 2070 WP_080557838.1 DUF4034 domain-containing protein -
  PPUBIRD1_RS25390 (PPUBIRD1_5033) comM 5628942..5630432 (+) 1491 WP_041167208.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PPUBIRD1_RS25395 (PPUBIRD1_5034) - 5630496..5630864 (-) 369 WP_076402376.1 response regulator -
  PPUBIRD1_RS25400 (PPUBIRD1_5035) - 5630861..5631853 (-) 993 WP_014592822.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53119.07 Da        Isoelectric Point: 7.8842

>NTDB_id=48254 PPUBIRD1_RS25390 WP_041167208.1 5628942..5630432(+) (comM) [Pseudomonas putida BIRD-1]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLKYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPIATLTDMECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGKAPLNSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAVRVAEARELQHRRQGCANAFLDLEGLRHHCGLVAADQVWLEGACERLTLSLRAAHRLLKVARTLADLERCETI
GRTHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=48254 PPUBIRD1_RS25390 WP_041167208.1 5628942..5630432(+) (comM) [Pseudomonas putida BIRD-1]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCTCATCTCACCCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAAGTACCCACAGCGGCGCATTACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGCCGA
TATGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCGACGGCCAGGTGCCGATTGCCACCCTGACCGATATGGAATGCCT
GGGCGAACTGGCGCTGTCGGGGAAATTGCGCCCGGTGCAGGGCGTGCTGCCTGCGGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTACCACGGGAAAATGCCGAGGAAGCCAGCCTGGCCGGCGGGTTGGTGGTGTATGCGGTGGGCCACCTG
CTGGAGTTGGTCGCCCACCTGAACGGCCAGGTGCCGCTGCCGCCCTACGCAGCCAACGGCCTGATCCTGCAGCAACGCCC
CTACCCGGACCTGAGCGAGGTGCAGGGCCAACTGGCAGCCAAACGAGCCTTGCTGCTGGCTGCTGCCGGGGCGCACAACC
TGCTGTTCACCGGGCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCACCGCTGGACGAG
CACGAGGCGCTGGAAGTGGCGGCAATCCAGTCGGTCAGCGGGAAAGCACCGCTGAACAGCTGGCCACAGCGCCCCTTTCG
CCACCCCCATCACTCTGCGTCCGGCCCGGCGCTGGTCGGTGGCGGTAGCCGACCGCAACCAGGTGAAATCACGCTCGCCC
ATCACGGCGTGTTGTTTCTCGACGAGCTTCCGGAGTTTGAGCGGCGCGTACTGGAAGTGCTTCGCGAGCCACTGGAGTCA
GGTGAAATCGTGATTGCCCGTGCCCGCGACAAAGTGCGTTTCCCCGCGCGCTTCCAGCTGGTGGCAGCGATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGCTGCAGCACCGAGCAGATCGCGCGCTATCGCAACAAGCTGT
CCGGGCCACTGCTGGACCGCATCGACCTGCACCTGACCGTGGCTCGCGAGAGCACTACGTTGAACAACCAGCCTTGCGGT
GAAACCAGTGCCGATGTCGCCGTCAGGGTGGCTGAAGCGCGGGAGCTGCAGCACAGGCGACAAGGCTGTGCGAATGCATT
TCTCGACCTTGAAGGTTTAAGGCATCACTGTGGGTTGGTAGCGGCGGACCAGGTCTGGCTGGAAGGGGCCTGCGAACGGC
TGACCTTGTCGCTAAGGGCGGCGCACCGGTTATTGAAGGTGGCGCGGACACTGGCGGACCTGGAGCGATGCGAGACGATT
GGACGGACGCACCTGGCCGAGGCCCTGCAGTACCGGCCAGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.847

100

0.558
  comM Haemophilus influenzae Rd KW20

55.2

100

0.556
  comM Vibrio cholerae strain A1552

55.354

99.798

0.552
  comM Glaesserella parasuis strain SC1401

54.092

100

0.546
  comM Legionella pneumophila str. Paris

49.194

100

0.492
  comM Legionella pneumophila strain ERS1305867

49.194

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.809

100

0.484

Multiple sequence alignment