Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IC806_RS10810 Genome accession   NZ_CP061471
Coordinates   2160271..2160765 (-) Length   164 a.a.
NCBI ID   WP_015376126.1    Uniprot ID   A0A1V9C2L1
Organism   Geobacillus zalihae strain SURF-114     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2155271..2165765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC806_RS10790 (IC806_10790) rplI 2156406..2156855 (-) 450 WP_020754217.1 50S ribosomal protein L9 -
  IC806_RS10795 (IC806_10795) - 2156852..2158828 (-) 1977 WP_081132932.1 DHH family phosphoesterase -
  IC806_RS10800 (IC806_10800) - 2158875..2159801 (-) 927 WP_011232943.1 YybS family protein -
  IC806_RS10805 (IC806_10805) rpsR 2159937..2160173 (-) 237 WP_008880812.1 30S ribosomal protein S18 -
  IC806_RS10810 (IC806_10810) ssbA 2160271..2160765 (-) 495 WP_015376126.1 single-stranded DNA-binding protein Machinery gene
  IC806_RS10815 (IC806_10815) rpsF 2160796..2161083 (-) 288 WP_011232945.1 30S ribosomal protein S6 -
  IC806_RS10820 (IC806_10820) ychF 2161298..2162398 (-) 1101 WP_015376127.1 redox-regulated ATPase YchF -
  IC806_RS10825 (IC806_10825) - 2162638..2164659 (-) 2022 WP_013524882.1 molybdopterin-dependent oxidoreductase -
  IC806_RS10830 (IC806_10830) - 2164716..2164913 (-) 198 WP_011232948.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18409.30 Da        Isoelectric Point: 4.7126

>NTDB_id=482431 IC806_RS10810 WP_015376126.1 2160271..2160765(-) (ssbA) [Geobacillus zalihae strain SURF-114]
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGERETDFIQCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQEGRRVYVTEVVADSVQFLEPKGTSEQRGATAGGYYGDPFPFGQDQNHRHPDEKGFGRIDDDPFANDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=482431 IC806_RS10810 WP_015376126.1 2160271..2160765(-) (ssbA) [Geobacillus zalihae strain SURF-114]
ATGATTAACCGCGTCATTTTGGTCGGCAGGTTAACGAGAGATCCGGAGTTGCGTTACACTCCAAGCGGAGTGGCTGTTGC
CACGTTTACGCTCGCGGTCAACCGTCCGTTTACAAATCAGCAGGGCGAGCGGGAAACGGATTTTATTCAATGTGTCGTTT
GGCGCCGCCAGGCGGAAAACGTCGCCAACTTTTTGAAAAAGGGGAGCTTGGCTGGTGTCGATGGCCGACTGCAAACCCGC
AGCTATGAAAATCAAGAAGGTCGGCGCGTGTACGTGACGGAAGTGGTGGCTGATAGCGTCCAATTTCTTGAGCCGAAAGG
AACGAGCGAGCAGCGAGGGGCAACAGCAGGCGGCTACTACGGGGATCCATTCCCATTCGGACAAGATCAGAACCACCGAC
ATCCCGATGAAAAAGGGTTTGGCCGCATCGATGACGATCCTTTCGCCAATGACGGCCAGCCGATCGATATTTCTGATGAT
GATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V9C2L1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.707
  ssb Latilactobacillus sakei subsp. sakei 23K

60.588

100

0.628
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

64.634

0.409
  ssb Vibrio cholerae strain A1552

35.028

100

0.378
  ssb Glaesserella parasuis strain SC1401

32.432

100

0.366