Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LMO4A_RS11620 Genome accession   NC_017529
Coordinates   2296629..2298434 (-) Length   601 a.a.
NCBI ID   WP_012580891.1    Uniprot ID   A0A0E0UZ98
Organism   Listeria monocytogenes L99     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2291629..2303434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMO4A_RS11600 (lmo4a_2245) isdE 2292552..2293424 (-) 873 WP_014589118.1 heme ABC transporter substrate-binding protein IsdE -
  LMO4A_RS11605 (lmo4a_2246) hbp2 2293511..2295220 (-) 1710 WP_012580893.1 hemin/hemoglobin-binding protein Hbp2 -
  LMO4A_RS11610 (lmo4a_2247) isdC 2295233..2295859 (-) 627 WP_012580892.1 heme uptake protein IsdC -
  LMO4A_RS11615 (lmo4a_2248) - 2296070..2296330 (-) 261 WP_003729592.1 DUF3116 family protein -
  LMO4A_RS11620 (lmo4a_2249) pepF 2296629..2298434 (-) 1806 WP_012580891.1 oligoendopeptidase F Regulator
  LMO4A_RS11625 (lmo4a_2250) - 2298507..2299622 (-) 1116 WP_014598978.1 competence protein CoiA -
  LMO4A_RS11630 (lmo4a_2251) mecA 2299749..2300402 (-) 654 WP_003722314.1 adaptor protein MecA -
  LMO4A_RS11635 (lmo4a_2252) spxA 2300634..2301029 (-) 396 WP_003720569.1 transcriptional regulator SpxA -
  LMO4A_RS11640 (lmo4a_2253) - 2301349..2302317 (-) 969 WP_003729595.1 ABC transporter ATP-binding protein -
  LMO4A_RS11645 (lmo4a_2254) - 2302314..2303390 (-) 1077 WP_003722316.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68574.70 Da        Isoelectric Point: 4.5711

>NTDB_id=48219 LMO4A_RS11620 WP_012580891.1 2296629..2298434(-) (pepF) [Listeria monocytogenes L99]
MSKTNALPLREEVPENLTWDLTTIYPNDEAWEQAFTDLQKITEESEQFKGRLSESSQTLYEALQFRDNAYDLISNLYVYA
HLKMDQDTANAKYQGLHSRAGSLVTKLMSALSYYDPEILAMDESVLKQFLNENKDLQLYAHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPTIKDENGEDIEITHGRFGKLLESNDPRVRREAFLGVYSVYEGLKNTLASTLNG
QVKKSNFYASTRGYTSAREAALSGNHIPETVYDSLLKSVNANADLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFT
YEEAKELVLEALKPLGDEYQAILKEAFDSRWIDVMENKGKRSGAYSSGSYSTNPYILLNWQDNINNVYTLAHELGHSVHS
YYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYEDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHAIHQADQQGV
ALTADFLTETYFDINKKYYGEAMVYDAEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQEAVTAYIDFLKAG
SSDYPIDVLKKAGVDMATPNPVDDALKVFEQRLDELEKLVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=48219 LMO4A_RS11620 WP_012580891.1 2296629..2298434(-) (pepF) [Listeria monocytogenes L99]
TTGAGTAAAACAAATGCATTACCTTTAAGAGAAGAAGTACCAGAAAATCTAACTTGGGATTTAACTACGATTTATCCAAA
TGATGAAGCTTGGGAACAAGCCTTTACAGATTTGCAAAAAATCACAGAAGAAAGCGAGCAATTTAAAGGGCGTTTATCGG
AAAGCAGCCAGACACTATATGAAGCACTTCAATTTCGAGATAATGCATATGATTTAATTAGTAACTTATATGTATATGCG
CATTTGAAAATGGACCAAGATACAGCTAATGCGAAATATCAAGGTTTACATAGTCGCGCAGGAAGCCTAGTTACAAAGCT
AATGTCTGCACTGTCTTATTATGATCCGGAAATTTTAGCTATGGACGAAAGTGTTTTAAAACAATTTTTGAATGAGAACA
AAGATTTACAATTATATGCGCATTTACTAGAAGAATTAAATTTAAGCCGACCGTATATTTTAAGTGAGAAGGAGGAGGCT
TTACTAGCTAACGCAGGTGAAGTGCTTGGAAGTTCGTCTAATACTTTTAATACCTTGAATAATGCAGATATGAAGTTCCC
AACTATTAAAGATGAGAACGGGGAAGATATCGAAATTACTCATGGTCGTTTCGGGAAATTGTTGGAAAGCAATGATCCAC
GTGTTCGTCGTGAAGCGTTTCTTGGTGTGTATTCTGTGTATGAAGGCCTAAAAAACACCTTAGCATCTACTTTAAATGGA
CAAGTGAAGAAGTCTAATTTTTATGCCTCTACTCGTGGCTACACGTCAGCTCGTGAAGCGGCTCTTTCTGGGAACCATAT
TCCTGAAACAGTATATGATTCGTTGCTAAAATCAGTAAATGCGAATGCAGATTTGCTTCATCGTTATGTGAAGTTGCGTA
AAGAATTACTTGGCTTAGAGGAATTGCATATGTATGATCTTTATACGCCACTTTCTGATGATGTTAATTTGGAGTTTACT
TATGAAGAAGCGAAAGAACTTGTGCTTGAAGCGCTTAAACCGCTTGGTGATGAATATCAAGCAATTTTAAAAGAAGCATT
TGATAGTCGTTGGATTGATGTTATGGAGAATAAAGGGAAACGTAGTGGAGCCTATTCATCTGGTTCATATAGTACGAATC
CTTATATTTTACTCAATTGGCAAGATAATATTAATAATGTTTATACACTTGCGCACGAATTAGGGCATAGTGTGCATAGT
TATTATACAAGAAAAAATCAACCTTTTGTTTACGGCGATTATTCGATTTTCTTGGCAGAAGTTGCTTCTACGACCAATGA
AAATCTGTTGACTGATTATCTGCTTAAGAAATATGAGGATCCTAAGGTACGTGCTTATTTGTTGAATCACTATTTGGATG
GATTCAAAGGGACTGTATTCCGCCAAACGCAATTTGCTGAATTTGAGCATGCAATTCATCAAGCCGATCAACAAGGTGTG
GCGCTGACTGCGGATTTCTTAACAGAAACATATTTTGATATTAATAAGAAATATTACGGAGAAGCGATGGTTTATGATGC
TGAAATTGGTTATGAATGGTCTCGTATTCCGCATTTTTATATGAATTATTATGTGTTCCAATATGCGACTGGTTTTTCTG
CAGCATCTGCATTAAGTGCGAAGATTTTAACAGAAGGCCAAGAAGCGGTAACTGCCTATATTGATTTCTTGAAAGCGGGA
AGTTCGGATTACCCTATCGATGTGTTGAAAAAAGCAGGAGTTGATATGGCAACTCCTAATCCGGTGGATGATGCACTAAA
AGTATTTGAACAAAGATTAGACGAACTAGAAAAATTAGTTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-586)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0UZ98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.351

98.502

0.506

Multiple sequence alignment