Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LMO4A_RS00190 Genome accession   NC_017529
Coordinates   42036..42572 (+) Length   178 a.a.
NCBI ID   WP_003721668.1    Uniprot ID   A0A0E0USV6
Organism   Listeria monocytogenes L99     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 37036..47572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMO4A_RS00170 (lmo4a_0034) - 38165..39250 (+) 1086 WP_012582217.1 glutamine--fructose-6-phosphate aminotransferase -
  LMO4A_RS00175 (lmo4a_0035) - 39439..40098 (+) 660 WP_003721665.1 DedA family protein -
  LMO4A_RS00180 (lmo4a_0036) arcA 40176..41408 (+) 1233 WP_012582216.1 arginine deiminase -
  LMO4A_RS00185 (lmo4a_0037) rpsF 41687..41980 (+) 294 WP_003721667.1 30S ribosomal protein S6 -
  LMO4A_RS00190 (lmo4a_0038) ssbA 42036..42572 (+) 537 WP_003721668.1 single-stranded DNA-binding protein Machinery gene
  LMO4A_RS00195 (lmo4a_0039) rpsR 42616..42855 (+) 240 WP_003721669.1 30S ribosomal protein S18 -
  LMO4A_RS00200 (lmo4a_0040) - 43008..43619 (+) 612 WP_003735137.1 PepSY domain-containing protein -
  LMO4A_RS00205 (lmo4a_0041) - 43877..44491 (+) 615 WP_003728981.1 accessory gene regulator ArgB-like protein -
  LMO4A_RS00210 (lmo4a_0042) - 44475..44636 (+) 162 WP_003721672.1 cyclic lactone autoinducer peptide -
  LMO4A_RS00215 (lmo4a_0043) - 44732..46027 (+) 1296 WP_014588973.1 sensor histidine kinase -
  LMO4A_RS00220 (lmo4a_0044) - 46046..46773 (+) 728 Protein_43 LytR/AlgR family response regulator transcription factor -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19493.14 Da        Isoelectric Point: 4.7306

>NTDB_id=48192 LMO4A_RS00190 WP_003721668.1 42036..42572(+) (ssbA) [Listeria monocytogenes L99]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNND
PFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=48192 LMO4A_RS00190 WP_003721668.1 42036..42572(+) (ssbA) [Listeria monocytogenes L99]
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAAGATCCTGAATTACGTTACACTCCAGCAGGCGTGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGTACTTTCACTAACCAACAAGGAGAACGAGAAGCCGACTTTATTAATTGTGTTGTTT
GGCGTAAACCGGCAGAAAACGTTGCTAATTTCCTGAAGAAGGGAAGCATGGCAGGCGTTGATGGTCGTGTTCAAACTCGT
AATTACGAGGGGAACGACGGCAAACGTGTTTATGTGACTGAAATTGTAGCAGAGAGCGTTCAATTCCTTGAACCGCGTAA
TTCTAATGGCGGTGGCGGAAATAACTATCAAAGTGGCAATAACAACAATAATTATAATAGCGGTGGAAATAACTTCGGAC
AAGCACCTACAAATAACGGTGGATTCGGACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAACAATGAT
CCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0USV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.539

100

0.685
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.556
  ssb Glaesserella parasuis strain SC1401

35.484

100

0.371
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

59.551

0.365

Multiple sequence alignment