Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ICJ55_RS08870 Genome accession   NZ_CP061280
Coordinates   1793961..1795157 (-) Length   398 a.a.
NCBI ID   WP_188156475.1    Uniprot ID   -
Organism   Mannheimia bovis strain ZY190616     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1788961..1800157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ55_RS08845 (ICJ55_08845) lptE 1790914..1791402 (+) 489 WP_188156471.1 LPS assembly lipoprotein LptE -
  ICJ55_RS08850 (ICJ55_08850) holA 1791444..1792466 (+) 1023 WP_188156472.1 DNA polymerase III subunit delta -
  ICJ55_RS08855 (ICJ55_08855) yacG 1792467..1792652 (-) 186 WP_025236197.1 DNA gyrase inhibitor YacG -
  ICJ55_RS08860 (ICJ55_08860) coaE 1792634..1793269 (-) 636 WP_188156473.1 dephospho-CoA kinase -
  ICJ55_RS08865 (ICJ55_08865) - 1793301..1793957 (-) 657 WP_188156474.1 prepilin peptidase -
  ICJ55_RS08870 (ICJ55_08870) pilC 1793961..1795157 (-) 1197 WP_188156475.1 type II secretion system F family protein Machinery gene
  ICJ55_RS08875 (ICJ55_08875) pilB 1795150..1796541 (-) 1392 WP_188156476.1 GspE/PulE family protein Machinery gene
  ICJ55_RS08880 (ICJ55_08880) pilA 1796562..1797044 (-) 483 WP_188156477.1 prepilin peptidase-dependent pilin Machinery gene
  ICJ55_RS08885 (ICJ55_08885) radA 1797226..1798605 (+) 1380 WP_188156478.1 DNA repair protein RadA -
  ICJ55_RS08890 (ICJ55_08890) - 1798659..1798889 (-) 231 WP_025236204.1 YgjV family protein -
  ICJ55_RS08895 (ICJ55_08895) - 1799016..1799504 (-) 489 WP_188156479.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 45834.58 Da        Isoelectric Point: 9.8886

>NTDB_id=481470 ICJ55_RS08870 WP_188156475.1 1793961..1795157(-) (pilC) [Mannheimia bovis strain ZY190616]
MVKIYEFHWKAIDRFQQKRKGRLLSLSREELESTLLAKGYEQIRVSRNFVFSQNPKKEEISQFLSQLALLVNSAVPLKQA
LFLILQNCRNIRLYQWLSELIQLIESGYSFSQSLEKLNKFITNQEIQLIKMGEQSGKLGFILTNLAESRVKADKLAKKVK
KILFYPVIVLFISLSLSIGLLVFIVPQFAELYGTKAQALPLITDILFSLSRCLIEQKNLLFTLLLLAVIFFLFFAKRGNW
RTKLKLRLLSKLPIFRQIIEQARIVFFSQNIALMLNAHIPLDIALKSFLSEKSDDPILQKEVEFMLNLLQQGYKFSQGIN
PNVFGLEMPQMIEIGERSGNVAKMCEHISEIYQQKLDYQIDILSQLLEPMLMLLMGVIVGTIIVGLYLPIFDMGSLVE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=481470 ICJ55_RS08870 WP_188156475.1 1793961..1795157(-) (pilC) [Mannheimia bovis strain ZY190616]
ATGGTTAAAATTTATGAATTTCATTGGAAAGCGATAGATCGTTTTCAACAAAAGCGTAAAGGTAGGCTGTTATCTTTAAG
CCGAGAAGAGCTTGAAAGCACATTACTTGCAAAAGGTTATGAACAAATTCGAGTTAGCCGAAATTTTGTCTTTTCGCAAA
ATCCGAAAAAAGAGGAGATCAGCCAATTTTTATCTCAACTGGCATTGTTAGTGAATTCTGCCGTTCCATTAAAGCAAGCT
CTCTTTTTGATTTTACAAAATTGCCGAAATATTAGGTTATATCAATGGCTAAGTGAATTAATTCAGTTAATTGAAAGCGG
TTACTCTTTTTCGCAATCTTTAGAAAAACTCAATAAATTTATTACTAACCAAGAAATTCAACTGATTAAAATGGGCGAGC
AGAGTGGAAAACTCGGTTTTATTTTAACCAATTTAGCGGAAAGCAGAGTTAAGGCAGATAAATTGGCTAAAAAGGTTAAG
AAAATCCTGTTTTATCCTGTAATAGTACTGTTTATCTCACTCTCTCTTTCTATCGGGCTTTTAGTATTTATCGTGCCACA
ATTTGCCGAGCTTTATGGTACAAAAGCACAAGCTTTACCACTGATTACCGACATTTTATTTTCTCTTTCTCGATGTTTGA
TTGAGCAGAAAAACCTTTTATTCACTTTATTATTACTAGCGGTCATTTTTTTCTTATTTTTTGCAAAAAGAGGGAATTGG
AGGACGAAATTGAAACTTAGGTTATTGTCTAAACTCCCTATTTTTAGGCAAATTATAGAACAAGCACGAATAGTCTTTTT
TAGCCAAAATATTGCATTAATGTTGAATGCTCATATTCCGTTAGATATCGCATTAAAATCGTTTTTATCCGAAAAAAGCG
ATGATCCTATCTTACAAAAAGAGGTTGAGTTTATGCTTAATCTTTTGCAGCAAGGCTATAAATTTTCGCAAGGCATTAAC
CCAAATGTATTTGGCTTAGAGATGCCACAAATGATCGAAATAGGCGAGCGGAGCGGCAATGTTGCTAAAATGTGTGAGCA
TATTAGCGAGATATACCAACAAAAACTGGATTATCAAATTGATATTCTCTCCCAGTTATTAGAGCCAATGTTGATGCTAC
TAATGGGCGTGATTGTCGGCACGATTATTGTCGGGCTATACTTACCGATTTTTGATATGGGAAGTTTAGTGGAGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

55.362

100

0.558
  pilC Haemophilus influenzae Rd KW20

42.893

100

0.432
  pilC Haemophilus influenzae 86-028NP

41.895

100

0.422