Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ICJ55_RS08675 Genome accession   NZ_CP061280
Coordinates   1756493..1757011 (+) Length   172 a.a.
NCBI ID   WP_188156444.1    Uniprot ID   A0A7H1C1F7
Organism   Mannheimia bovis strain ZY190616     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1751493..1762011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ55_RS08665 (ICJ55_08665) rng 1751865..1753340 (-) 1476 WP_188156442.1 ribonuclease G -
  ICJ55_RS08670 (ICJ55_08670) uvrA 1753502..1756330 (-) 2829 WP_188156443.1 excinuclease ABC subunit UvrA -
  ICJ55_RS08675 (ICJ55_08675) ssb 1756493..1757011 (+) 519 WP_188156444.1 single-stranded DNA-binding protein Machinery gene
  ICJ55_RS08680 (ICJ55_08680) - 1757111..1758403 (+) 1293 WP_188156445.1 hemolysin family protein -
  ICJ55_RS08685 (ICJ55_08685) bioB 1758566..1759218 (-) 653 Protein_1660 biotin synthase BioB -
  ICJ55_RS08690 (ICJ55_08690) pckA 1759298..1760911 (-) 1614 WP_188157720.1 phosphoenolpyruvate carboxykinase (ATP) -
  ICJ55_RS08695 (ICJ55_08695) ftsB 1761176..1761454 (+) 279 WP_025236163.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19122.92 Da        Isoelectric Point: 5.2533

>NTDB_id=481469 ICJ55_RS08675 WP_188156444.1 1756493..1757011(+) (ssb) [Mannheimia bovis strain ZY190616]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVCGQYLRKGSQVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLGSRQGNDMGGQPSGWGNSAPAGNSYNQGNSNYGYNQTSSSAPQQSKPVPQAE
PAMNNFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=481469 ICJ55_RS08675 WP_188156444.1 1756493..1757011(+) (ssb) [Mannheimia bovis strain ZY190616]
ATGGCTGGTATTAACAAAGTAATTATCGTAGGTAACTTGGGTAACGACCCGGAAATGCGTACAATGCCAAACGGCGAAGC
AGTTGCAAATATTAGTGTTGCAACATCAGAAAGCTGGACAGATAAAAACACTGGCGAACGCCGTGAAGTAACCGAATGGC
ATCGTATTGTGTTCTACCGTCGTCAAGCAGAAGTTTGTGGTCAATATTTACGTAAAGGCTCACAAGTTTATGTAGAAGGT
CGTTTAAGAACCCGTAAATGGCAAGACCAAAACGGGCAAGATCGCTACACTACCGAAATTCAAGGCGATGTATTACAAAT
GTTAGGTAGTCGTCAAGGCAACGATATGGGTGGACAACCGAGTGGTTGGGGTAATTCAGCACCTGCGGGTAATAGCTATA
ATCAAGGCAATAGTAATTATGGTTATAACCAAACTTCAAGTTCAGCACCACAGCAATCTAAACCTGTTCCACAAGCTGAG
CCTGCAATGAATAACTTTGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H1C1F7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

74.033

100

0.779
  ssb Vibrio cholerae strain A1552

56.25

100

0.576
  ssb Neisseria meningitidis MC58

48.295

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.494
  ssb Latilactobacillus sakei subsp. sakei 23K

35.556

100

0.372