Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ICJ55_RS01460 Genome accession   NZ_CP061280
Coordinates   277865..279004 (-) Length   379 a.a.
NCBI ID   WP_188157026.1    Uniprot ID   A0A7H1C399
Organism   Mannheimia bovis strain ZY190616     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 272865..284004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ55_RS01430 (ICJ55_01430) rplJ 273099..273590 (-) 492 WP_025235143.1 50S ribosomal protein L10 -
  ICJ55_RS01435 (ICJ55_01435) rplA 273876..274565 (-) 690 WP_188157021.1 50S ribosomal protein L1 -
  ICJ55_RS01440 (ICJ55_01440) rplK 274570..274998 (-) 429 WP_188157022.1 50S ribosomal protein L11 -
  ICJ55_RS01445 (ICJ55_01445) - 275169..276635 (-) 1467 WP_188157023.1 alkaline phosphatase -
  ICJ55_RS01450 (ICJ55_01450) nusG 276763..277326 (-) 564 WP_188157024.1 transcription termination/antitermination protein NusG -
  ICJ55_RS01455 (ICJ55_01455) secE 277328..277741 (-) 414 WP_188157025.1 preprotein translocase subunit SecE -
  ICJ55_RS01460 (ICJ55_01460) dprA 277865..279004 (-) 1140 WP_188157026.1 DNA-processing protein DprA Machinery gene
  ICJ55_RS01465 (ICJ55_01465) def 279092..279604 (+) 513 WP_188157027.1 peptide deformylase -
  ICJ55_RS01470 (ICJ55_01470) rfaD 279699..280631 (+) 933 WP_188157028.1 ADP-glyceromanno-heptose 6-epimerase -
  ICJ55_RS01475 (ICJ55_01475) - 280776..281666 (-) 891 WP_244141794.1 transposase -
  ICJ55_RS01480 (ICJ55_01480) - 282777..283088 (-) 312 WP_188157029.1 hypothetical protein -
  ICJ55_RS01485 (ICJ55_01485) - 283130..283651 (-) 522 WP_188157030.1 hypothetical protein -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42322.54 Da        Isoelectric Point: 5.2351

>NTDB_id=481457 ICJ55_RS01460 WP_188157026.1 277865..279004(-) (dprA) [Mannheimia bovis strain ZY190616]
MAHQYNLLRLLQVPQFGAQRIGRLLNEVDFAQFCDYDKVQLKQMGWNEKQIQRWFNPDKNWIEQSLTWAEQENQRIITLF
DDDYPFLLRQISTAPPLLYIKGMAESLSLPQIAIVGSRDYSPYGEYWAGQFAEQLTQHNLAVTSGLAIGIDGFAHKKVVE
QQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNQPPMAENFPRRNRIISGLSLGTLVIEATINSGSLITAR
YALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVETVADILEAISHQYQPQQISLFDKPSLSVSKPLQAVEKEKFFAKD
LPNLTACQQQIYQHINLDPISIDDLAKAVEMPIEALLVELLGLELLGVIRQVSGGYVVS

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=481457 ICJ55_RS01460 WP_188157026.1 277865..279004(-) (dprA) [Mannheimia bovis strain ZY190616]
ATGGCACATCAATACAATTTATTACGATTATTGCAAGTTCCACAGTTTGGAGCACAGCGAATTGGGCGATTATTGAATGA
AGTTGATTTTGCTCAATTTTGCGATTATGACAAAGTGCAGCTTAAACAAATGGGCTGGAACGAAAAGCAAATTCAACGTT
GGTTTAATCCGGATAAAAATTGGATTGAGCAATCCCTTACTTGGGCGGAGCAAGAAAATCAACGAATTATCACGTTGTTT
GATGACGATTATCCATTTCTTTTACGCCAAATTTCTACCGCACCGCCGCTTCTTTATATAAAAGGAATGGCAGAAAGCCT
TTCGTTACCACAAATTGCGATTGTAGGCAGTCGAGATTATTCCCCTTACGGTGAATATTGGGCAGGGCAATTTGCCGAAC
AACTCACTCAACATAATCTAGCCGTAACCAGCGGATTAGCAATTGGCATTGATGGTTTTGCCCATAAAAAAGTGGTTGAA
CAGCAAGGCATCACCATTGCGGTTTTGGGGAGTGGTTTAAATCAGGTTTATCCTGCTCGGCATAAAAAATTAGCGGAGCA
GATTGTGGATTTAGGTGGTGCGTTGGTGTCAGAGTTTTCACCCAATCAACCACCGATGGCAGAAAATTTTCCTCGCCGCA
ATCGGATTATCAGTGGTTTATCACTCGGCACGTTGGTAATTGAAGCAACTATCAATAGCGGATCATTGATTACTGCTCGC
TATGCGTTGGAGCAAGGGAGAGAAGTTTTTGCCTTACCGAATGCGGTGCAAAACCCGTATGCTCAAGGTTGCCATAAATT
AATTAAAGAAGGGGCGTTGTTAGTGGAAACTGTCGCAGATATTTTAGAAGCTATTAGTCATCAATACCAACCACAGCAAA
TCTCTTTATTTGATAAGCCTTCACTATCAGTAAGTAAGCCTTTACAAGCGGTTGAAAAAGAGAAATTTTTTGCAAAAGAT
TTGCCAAATCTGACCGCTTGTCAGCAGCAAATTTATCAACATATTAACCTAGACCCGATTTCTATTGATGATTTAGCAAA
AGCAGTAGAAATGCCGATAGAAGCCCTTTTGGTGGAATTGTTAGGGTTGGAATTATTAGGTGTGATTAGACAGGTAAGTG
GAGGCTATGTGGTAAGCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)

DprA winged helix domain (DprA_WH)

(319-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H1C399

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.087

100

0.731
  dprA Haemophilus influenzae Rd KW20

50.291

90.765

0.456
  dprA Vibrio campbellii strain DS40M4

45.187

98.681

0.446
  dprA Vibrio cholerae strain A1552

42.593

99.736

0.425
  dprA Acinetobacter baumannii strain A118

36.364

100

0.369
  dprA Legionella pneumophila strain ERS1305867

40

91.029

0.364