Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ICJ55_RS00935 Genome accession   NZ_CP061280
Coordinates   164975..165304 (-) Length   109 a.a.
NCBI ID   WP_188156936.1    Uniprot ID   -
Organism   Mannheimia bovis strain ZY190616     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 159975..170304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ55_RS00920 (ICJ55_00920) gshAB 160554..162833 (-) 2280 WP_188156933.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  ICJ55_RS00925 (ICJ55_00925) - 163042..163845 (+) 804 WP_188156934.1 tyrosine-type recombinase/integrase -
  ICJ55_RS00930 (ICJ55_00930) asd 163914..164810 (-) 897 WP_188156935.1 archaetidylserine decarboxylase -
  ICJ55_RS00935 (ICJ55_00935) comEA/comE1 164975..165304 (-) 330 WP_188156936.1 helix-hairpin-helix domain-containing protein Machinery gene
  ICJ55_RS00940 (ICJ55_00940) - 165594..166907 (+) 1314 WP_188156937.1 LysM-like peptidoglycan-binding domain-containing protein -
  ICJ55_RS00945 (ICJ55_00945) - 166964..167371 (+) 408 WP_188156938.1 MliC family protein -
  ICJ55_RS00950 (ICJ55_00950) waaF 167481..168518 (+) 1038 WP_188156939.1 lipopolysaccharide heptosyltransferase II -
  ICJ55_RS00955 (ICJ55_00955) rfaC 168585..169544 (+) 960 WP_188156940.1 lipopolysaccharide heptosyltransferase RfaC -
  ICJ55_RS00960 (ICJ55_00960) rpsL 169665..170039 (+) 375 WP_005708967.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11817.46 Da        Isoelectric Point: 8.5618

>NTDB_id=481456 ICJ55_RS00935 WP_188156936.1 164975..165304(-) (comEA/comE1) [Mannheimia bovis strain ZY190616]
MKKMKTIALGLLMGLNTLTFAQTPSQIEQNNTVQDNQQITQISTNAVNINTASAAELQDKLVGIGEKKAQAIVDYRTKNG
NFKSIEQLAEVSGIGQATVEKNRANIVLE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=481456 ICJ55_RS00935 WP_188156936.1 164975..165304(-) (comEA/comE1) [Mannheimia bovis strain ZY190616]
ATGAAAAAGATGAAAACTATCGCACTGGGTCTATTAATGGGCTTAAATACCTTAACTTTTGCTCAAACACCATCACAAAT
TGAGCAAAATAATACGGTTCAAGATAATCAACAGATAACACAAATAAGCACCAATGCGGTTAATATCAACACTGCAAGTG
CTGCCGAATTGCAGGATAAGCTGGTCGGTATTGGTGAGAAAAAAGCTCAAGCTATTGTCGATTACCGAACAAAAAACGGG
AATTTCAAGAGCATTGAACAGCTTGCTGAAGTGTCAGGCATTGGGCAAGCAACGGTAGAAAAAAATAGGGCGAATATCGT
TTTAGAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(45-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

53.982

100

0.56
  comEA Vibrio cholerae C6706

47.17

97.248

0.459
  comEA Vibrio cholerae strain A1552

47.17

97.248

0.459
  comEA Vibrio campbellii strain DS40M4

40.741

99.083

0.404
  comEA Lactococcus lactis subsp. cremoris KW2

55.556

66.055

0.367