Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ICJ04_RS16910 Genome accession   NZ_CP061204
Coordinates   3868103..3869605 (+) Length   500 a.a.
NCBI ID   WP_188325324.1    Uniprot ID   A0A7H1AL63
Organism   Stenotrophomonas sp. 169     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3863103..3874605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ04_RS16910 (ICJ04_16910) comM 3868103..3869605 (+) 1503 WP_188325324.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ICJ04_RS16915 (ICJ04_16915) - 3869940..3870611 (+) 672 WP_188325325.1 VOC family protein -
  ICJ04_RS16920 (ICJ04_16920) - 3870652..3871215 (+) 564 WP_188325326.1 hypothetical protein -
  ICJ04_RS16925 (ICJ04_16925) ubiA 3871238..3872128 (-) 891 WP_188325327.1 4-hydroxybenzoate octaprenyltransferase -
  ICJ04_RS16930 (ICJ04_16930) - 3872307..3873473 (+) 1167 WP_188325328.1 nucleotide sugar dehydrogenase -
  ICJ04_RS16940 (ICJ04_16940) - 3874021..3874416 (+) 396 WP_188325329.1 hypothetical protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53356.99 Da        Isoelectric Point: 7.6929

>NTDB_id=481342 ICJ04_RS16910 WP_188325324.1 3868103..3869605(+) (comM) [Stenotrophomonas sp. 169]
MSLALVHSRARSGADAPLVRVEVHLSGGLPVTQIVGLPETTVRESRERVRAALLCARFDYPQRRITINLGPADLPKEGGR
FDLAIAMGILAASGQLDPQQVVRHEYVAELALTGELRPVDGVLPAAIAAAEAGRTLFVPPANAAEAALAEHADVRVARTL
LEVCASVDNPARLPRAERESIEADPPLDLTDVRGQAHARRALEVAAAGGHHLLLIGSPGCGKTLLASRLPGILPEASQAE
ALQTAAVASISGSGLDPRRWRQRAFRAPHHSASAAALAGGGNPPHPGEISLAHNGVLFLDELPEWSRSALEILREPLESG
HIRISRAARSVVFPARFQLVTAMNPCPCGWAGDRSNRCLCTSERIQRYRGRVSGPLLDRIDLHVTVMRLSPEELREGAPA
GECSADVRARVIAARERQLARGALNAHLDSKALRACASLVEADQGLLEQAIERLQLSARAMHRILRVARTIADLAGCEDI
GTEHLAEAIGYRQLDRGGGV

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=481342 ICJ04_RS16910 WP_188325324.1 3868103..3869605(+) (comM) [Stenotrophomonas sp. 169]
ATGAGCCTCGCGCTGGTCCACAGCCGCGCCCGCTCCGGTGCCGATGCGCCGCTGGTTCGTGTGGAGGTGCACCTGTCCGG
CGGGTTGCCCGTCACGCAGATCGTCGGCCTGCCGGAAACCACCGTGCGCGAGTCACGCGAACGCGTCCGTGCCGCCCTGC
TCTGCGCGCGCTTCGACTACCCGCAACGACGTATCACCATCAACCTCGGGCCGGCCGATCTGCCCAAAGAAGGCGGCCGC
TTCGACCTGGCCATCGCGATGGGCATCCTCGCCGCCAGCGGCCAGTTGGATCCGCAGCAGGTGGTCCGTCATGAGTACGT
GGCCGAACTGGCGCTTACCGGCGAGCTGCGCCCGGTAGACGGCGTGTTGCCCGCCGCCATCGCCGCTGCTGAGGCCGGAC
GCACGTTGTTCGTGCCACCTGCCAATGCCGCCGAGGCGGCGCTGGCGGAACATGCGGATGTGCGCGTGGCCCGCACGCTG
TTGGAAGTCTGTGCCTCCGTGGATAACCCGGCGCGACTGCCGCGGGCGGAAAGGGAGAGCATTGAGGCGGATCCACCGCT
GGACCTGACCGACGTGCGGGGCCAGGCGCATGCACGGCGCGCTTTGGAAGTGGCTGCGGCGGGCGGGCATCACCTGCTGC
TGATCGGCAGCCCGGGTTGCGGTAAGACGCTGCTGGCGTCGCGGCTGCCCGGCATCCTGCCGGAGGCCAGCCAGGCCGAG
GCGCTGCAGACGGCTGCGGTGGCGTCGATCAGCGGCAGTGGATTGGATCCACGACGATGGCGGCAGCGGGCGTTCCGGGC
GCCGCACCACAGTGCGAGTGCAGCGGCGCTGGCGGGCGGCGGCAATCCGCCGCATCCCGGAGAAATCTCGCTTGCGCACA
ATGGCGTGTTGTTCCTGGATGAGCTTCCCGAATGGTCACGCAGTGCGTTGGAGATCCTGCGTGAGCCGTTGGAGTCGGGC
CATATCCGTATCAGCCGGGCGGCACGCAGCGTGGTGTTTCCTGCACGGTTCCAACTGGTGACGGCGATGAACCCCTGCCC
TTGCGGCTGGGCGGGTGATCGCAGCAATCGGTGTCTGTGTACCAGCGAGCGTATCCAGCGTTATCGCGGCCGGGTGTCTG
GGCCGCTGCTGGATCGCATTGATCTGCATGTCACGGTGATGCGGCTGTCGCCGGAAGAGCTACGGGAAGGTGCGCCTGCG
GGCGAATGCAGTGCGGATGTGCGGGCGCGTGTGATTGCAGCGCGCGAGCGGCAGTTGGCGCGCGGGGCGCTCAATGCGCA
TCTGGACAGCAAGGCGCTGCGGGCGTGTGCGTCGCTGGTGGAGGCGGATCAGGGGCTGTTGGAGCAAGCGATCGAGCGGT
TGCAGCTGTCGGCGCGTGCGATGCATCGGATTCTGCGCGTGGCGCGGACGATTGCGGATCTTGCCGGGTGTGAGGATATC
GGGACGGAGCATCTGGCGGAGGCGATCGGCTATCGGCAGTTGGATCGTGGGGGTGGTGTGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H1AL63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.076

100

0.544
  comM Glaesserella parasuis strain SC1401

52.883

100

0.532
  comM Vibrio campbellii strain DS40M4

53.2

100

0.532
  comM Vibrio cholerae strain A1552

53.106

99.8

0.53
  comM Legionella pneumophila str. Paris

49.505

100

0.5
  comM Legionella pneumophila strain ERS1305867

49.505

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.446