Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NMBM01240355_RS00100 Genome accession   NC_017517
Coordinates   18229..18660 (-) Length   143 a.a.
NCBI ID   WP_220186514.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240355     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 13229..23660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS00090 (NMBM01240355_0017) lpxC 14847..15770 (-) 924 WP_002216134.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NMBM01240355_RS00095 (NMBM01240355_0018) pilE 16623..17135 (-) 513 WP_014581673.1 pilin Machinery gene
  NMBM01240355_RS00100 (NMBM01240355_0020) pilE 18229..18660 (-) 432 WP_220186514.1 pilin Machinery gene
  NMBM01240355_RS00105 (NMBM01240355_0021) - 18890..19287 (-) 398 Protein_18 pilin -
  NMBM01240355_RS00110 (NMBM01240355_0022) - 19397..19813 (-) 417 Protein_19 pilin -
  NMBM01240355_RS00115 (NMBM01240355_0023) - 19996..20406 (-) 411 Protein_20 pilin -
  NMBM01240355_RS00120 (NMBM01240355_0024) - 20639..21058 (-) 420 Protein_21 pilin -
  NMBM01240355_RS13950 (NMBM01240355_0025) - 21380..21661 (-) 282 Protein_22 pilin -
  NMBM01240355_RS00130 (NMBM01240355_0026) - 21875..22270 (-) 396 Protein_23 pilin -
  NMBM01240355_RS00135 (NMBM01240355_0027) - 22404..22738 (-) 335 Protein_24 pilin -
  NMBM01240355_RS11810 (NMBM01240355_0028) - 22743..23147 (-) 405 WP_014581680.1 pilin -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15345.33 Da        Isoelectric Point: 10.3648

>NTDB_id=48083 NMBM01240355_RS00100 WP_220186514.1 18229..18660(-) (pilE) [Neisseria meningitidis M01-240355]
MPTRLDSRLRGNDEAILLAEGQKSAVTEYYLNHGIWPGGNSDAGVASSSTIKGKYVQKVEVKNGVVTATMLSSGVNKEIK
GKKLSLWAKRQNGSVKWFCGLPVERTAPTTTNDDVKADTAANGKQIDTKHLPSTASTRKSTPN

Nucleotide


Download         Length: 432 bp        

>NTDB_id=48083 NMBM01240355_RS00100 WP_220186514.1 18229..18660(-) (pilE) [Neisseria meningitidis M01-240355]
GTGCCGACGAGGCTGGATTCCCGCCTGCGCGGGAATGACGAAGCTATCCTTTTGGCTGAAGGTCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATCACGGCATATGGCCCGGCGGCAACAGTGATGCCGGCGTGGCATCTTCTTCAACAATCAAAGGCA
AATATGTTCAGAAAGTTGAAGTCAAAAACGGCGTCGTTACCGCCACAATGCTTTCAAGCGGCGTAAACAAAGAAATCAAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAAACGGTTCGGTAAAATGGTTCTGCGGACTGCCGGTTGAGCGCACCGC
CCCCACCACCACCAACGACGACGTCAAAGCCGACACCGCCGCCAACGGCAAGCAGATCGACACCAAACACCTGCCGTCAA
CAGCATCGACAAGAAAATCGACACCAAACTAG

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

69.504

98.601

0.685
  pilE Neisseria gonorrhoeae MS11

68.31

99.301

0.678

Multiple sequence alignment