Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilC   Type   Machinery gene
Locus tag   NMBH4476_RS15760 Genome accession   NC_017516
Coordinates   48075..48200 (+) Length   41 a.a.
NCBI ID   WP_009344866.1    Uniprot ID   -
Organism   Neisseria meningitidis H44/76     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 43075..53200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBH4476_RS00235 (NMBH4476_0044) pilA 43138..44403 (+) 1266 WP_002243928.1 signal recognition particle-docking protein FtsY Machinery gene
  NMBH4476_RS00245 (NMBH4476_0045) - 45031..45315 (+) 285 WP_002216166.1 GIY-YIG nuclease family protein -
  NMBH4476_RS15760 pilC 48075..48200 (+) 126 WP_009344866.1 hypothetical protein Machinery gene
  NMBH4476_RS00255 (NMBH4476_0046) pilC 48173..51223 (+) 3051 Protein_49 PilC family type IV pilus tip adhesin -

Sequence


Protein


Download         Length: 41 a.a.        Molecular weight: 4802.69 Da        Isoelectric Point: 12.8142

>NTDB_id=48081 NMBH4476_RS15760 WP_009344866.1 48075..48200(+) (pilC) [Neisseria meningitidis H44/76]
MNKTWKRQVFRHTALYTAILMFSHTGGGGGRRKRKRINTLL

Nucleotide


Download         Length: 126 bp        

>NTDB_id=48081 NMBH4476_RS15760 WP_009344866.1 48075..48200(+) (pilC) [Neisseria meningitidis H44/76]
ATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGG
GGGGGGGGGCAGGCGCAAGCGCAAACGCATAAATACGCTATTGTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

90

73.171

0.659


Multiple sequence alignment