Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IAI58_RS11915 Genome accession   NZ_CP061091
Coordinates   2519759..2521255 (+) Length   498 a.a.
NCBI ID   WP_207447607.1    Uniprot ID   -
Organism   Roseomonas marmotae strain 1318     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2514759..2526255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAI58_RS11895 (IAI58_11885) - 2515160..2516005 (-) 846 WP_207447601.1 ABC transporter permease -
  IAI58_RS11900 (IAI58_11890) - 2516005..2516988 (-) 984 WP_207447603.1 ABC transporter permease -
  IAI58_RS11905 (IAI58_11895) - 2516999..2518579 (-) 1581 WP_237182430.1 ABC transporter substrate-binding protein -
  IAI58_RS11910 (IAI58_11900) - 2518680..2519714 (+) 1035 WP_207447605.1 histone deacetylase family protein -
  IAI58_RS11915 (IAI58_11905) comM 2519759..2521255 (+) 1497 WP_207447607.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IAI58_RS11920 (IAI58_11910) - 2521690..2521833 (+) 144 WP_207447609.1 hypothetical protein -
  IAI58_RS11925 (IAI58_11915) - 2521851..2522108 (-) 258 WP_237182431.1 hypothetical protein -
  IAI58_RS11930 (IAI58_11920) - 2522183..2522641 (-) 459 WP_237182846.1 hypothetical protein -
  IAI58_RS11935 (IAI58_11925) - 2522656..2522988 (+) 333 WP_207447611.1 hypothetical protein -
  IAI58_RS11940 (IAI58_11930) - 2522995..2523885 (-) 891 WP_207447613.1 SMP-30/gluconolactonase/LRE family protein -
  IAI58_RS11945 (IAI58_11935) - 2524277..2525461 (-) 1185 WP_207447615.1 phosphoserine transaminase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 51925.87 Da        Isoelectric Point: 8.1332

>NTDB_id=480599 IAI58_RS11915 WP_207447607.1 2519759..2521255(+) (comM) [Roseomonas marmotae strain 1318]
MTIARLASFAFSGIETLPVEVQVQISPGLPSFMVVGLPDKAVAESRERVRAALTGLGLSLPPKRVLVNLAPANIQKEGSH
FDLPIALAVLAAMDVVPREELAQFAALGELALDGTVGPVAGILPAALGAAARGLGLICPGSQGAEAAWAGEIEILAASDL
RQFIAHLTGRQVLDPPTPPALLPEDRGGPCLSEVKGQESAKRALEIAAAGRHNLLLIGPPGAGKSMLAARLPGLLPDLTP
QEALEVSLIRSVAGLIEQGRITARPPFREPHHSASQAALVGGGPGARPGEISLAHRGVLFLDEWPEFPRPALEALRQPLE
SGICTISRAAAHVTYPARVQLVAAMNPCRCGHLGDGQRECGQAPRCGEQYQSRLSGPLLDRIDLSIGMAPIPPGELARAP
RGESSATVAARVASARQAQLRRDGFRNAEAPLDSLTAAASAETIALAERAAGKLGLSNRGFTRCFRVARSIADLAGEARI
ARVHMAEALAFRHRAAGH

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=480599 IAI58_RS11915 WP_207447607.1 2519759..2521255(+) (comM) [Roseomonas marmotae strain 1318]
ATGACCATCGCACGGCTGGCGAGTTTCGCGTTTTCCGGGATCGAAACCCTGCCGGTCGAGGTGCAGGTGCAGATCTCGCC
TGGGCTGCCGTCCTTCATGGTGGTGGGCCTGCCCGACAAGGCCGTGGCGGAGAGCCGGGAGCGCGTGCGCGCGGCGCTGA
CCGGCCTTGGCCTTTCCCTGCCACCGAAGCGGGTGCTGGTGAATCTGGCACCCGCCAATATCCAGAAGGAAGGCAGCCAT
TTCGACCTGCCCATCGCCCTGGCCGTCCTGGCCGCGATGGATGTGGTGCCGCGCGAGGAACTGGCCCAGTTCGCCGCGCT
GGGAGAACTGGCGCTGGATGGCACGGTAGGTCCCGTGGCGGGCATCCTGCCGGCGGCGTTGGGCGCGGCGGCGCGCGGGC
TGGGCCTGATCTGCCCGGGCAGCCAGGGGGCCGAGGCCGCCTGGGCCGGGGAGATCGAGATCCTCGCGGCTTCCGACCTC
CGCCAGTTCATCGCGCATCTCACGGGGCGGCAGGTGCTGGACCCACCCACCCCACCCGCATTGTTGCCGGAAGACAGGGG
CGGACCGTGCCTTTCCGAGGTGAAAGGGCAGGAAAGCGCCAAGCGGGCGCTGGAGATCGCGGCGGCCGGCCGGCACAATC
TCCTGCTCATCGGCCCGCCGGGGGCGGGCAAGTCGATGCTGGCCGCACGCCTGCCGGGCCTGTTACCCGATCTGACGCCG
CAGGAGGCGCTGGAGGTCAGCCTGATCCGCAGCGTTGCCGGCCTGATCGAACAGGGCCGCATCACCGCCCGTCCGCCGTT
CCGGGAGCCGCACCACTCCGCCAGCCAGGCGGCGCTGGTGGGCGGTGGCCCCGGCGCGCGGCCTGGCGAGATCAGCCTGG
CACATCGCGGCGTGCTCTTCCTGGACGAGTGGCCCGAATTTCCTCGCCCCGCCCTGGAAGCTCTGCGACAGCCACTGGAG
AGCGGCATCTGCACCATCAGCCGCGCGGCAGCGCATGTGACCTATCCCGCGCGGGTGCAACTGGTCGCAGCGATGAATCC
CTGCCGCTGCGGTCATCTGGGGGATGGGCAGCGCGAATGCGGGCAGGCACCCAGATGCGGGGAGCAGTATCAGTCCCGCC
TCTCCGGTCCGCTGCTGGACCGCATCGACCTCTCCATCGGCATGGCCCCGATTCCGCCCGGCGAGCTGGCGCGGGCACCG
CGCGGCGAAAGCAGCGCCACCGTTGCCGCCCGCGTGGCAAGCGCGCGGCAGGCGCAACTGCGGCGCGACGGATTCCGCAA
TGCCGAAGCGCCGCTCGACAGCCTGACGGCTGCGGCCTCGGCCGAGACCATCGCGCTTGCCGAGCGCGCAGCGGGGAAAT
TGGGGCTTTCCAATCGCGGCTTCACGCGCTGCTTTCGCGTCGCGCGCAGCATCGCCGATCTGGCGGGCGAGGCGCGGATC
GCACGGGTCCATATGGCGGAGGCGCTGGCCTTCCGGCACCGCGCCGCCGGGCATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.096

100

0.482
  comM Glaesserella parasuis strain SC1401

44.071

100

0.448
  comM Vibrio campbellii strain DS40M4

44.869

99.799

0.448
  comM Haemophilus influenzae Rd KW20

44.311

100

0.446
  comM Legionella pneumophila strain ERS1305867

43.056

100

0.436
  comM Legionella pneumophila str. Paris

43.056

100

0.436
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.373

100

0.424