Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IBZ15_RS22620 Genome accession   NZ_CP061076
Coordinates   4729862..4730392 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain 4526     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4724862..4735392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBZ15_RS22585 (IBZ15_22520) - 4725053..4725721 (-) 669 WP_004936814.1 glutathione S-transferase family protein -
  IBZ15_RS22590 (IBZ15_22525) - 4725718..4726161 (-) 444 WP_015379208.1 lipocalin-like domain-containing protein -
  IBZ15_RS22595 (IBZ15_22530) bhsA 4726357..4726617 (+) 261 WP_197829449.1 multiple stress resistance protein BhsA -
  IBZ15_RS22600 (IBZ15_22535) - 4726673..4727590 (-) 918 WP_413713783.1 LysR family transcriptional regulator -
  IBZ15_RS22605 (IBZ15_22540) - 4727718..4728467 (+) 750 WP_004936803.1 3-oxoacyl-ACP reductase family protein -
  IBZ15_RS22610 (IBZ15_22545) - 4728620..4729147 (+) 528 WP_413713784.1 hypothetical protein -
  IBZ15_RS22615 (IBZ15_22550) - 4729148..4729723 (+) 576 WP_413713785.1 hypothetical protein -
  IBZ15_RS22620 (IBZ15_22555) ssb 4729862..4730392 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IBZ15_RS22625 (IBZ15_22560) uvrA 4730670..4733498 (+) 2829 WP_015379213.1 excinuclease ABC subunit UvrA -
  IBZ15_RS22630 (IBZ15_22565) - 4733728..4734780 (+) 1053 WP_413713786.1 NAD(P)-dependent alcohol dehydrogenase -
  IBZ15_RS22635 (IBZ15_22570) maa 4734812..4735369 (-) 558 WP_044030338.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=480364 IBZ15_RS22620 WP_004936793.1 4729862..4730392(-) (ssb) [Serratia marcescens strain 4526]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=480364 IBZ15_RS22620 WP_004936793.1 4729862..4730392(-) (ssb) [Serratia marcescens strain 4526]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364