Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   IAU63_RS13130 Genome accession   NZ_CP061030
Coordinates   1669839..1670009 (+) Length   56 a.a.
NCBI ID   WP_277816944.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain Z0118SP0108     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1664839..1675009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU63_RS08095 - 1667469..1668329 (+) 861 WP_187470762.1 glycosyltransferase -
  IAU63_RS08100 - 1668393..1668755 (+) 363 WP_131090790.1 hypothetical protein -
  IAU63_RS08105 - 1668830..1669138 (+) 309 WP_063284913.1 DUF3884 family protein -
  IAU63_RS13125 comA 1669513..1669812 (+) 300 WP_198462542.1 cysteine peptidase family C39 domain-containing protein Regulator
  IAU63_RS13130 comA 1669839..1670009 (+) 171 WP_277816944.1 hypothetical protein Regulator
  IAU63_RS08110 comA 1670006..1671658 (+) 1653 WP_206680121.1 peptide cleavage/export ABC transporter Regulator
  IAU63_RS08115 - 1671915..1672730 (-) 816 WP_015728742.1 ZIP family metal transporter -
  IAU63_RS08120 - 1672842..1674719 (+) 1878 WP_015728743.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 56 a.a.        Molecular weight: 6668.00 Da        Isoelectric Point: 10.0995

>NTDB_id=479920 IAU63_RS13130 WP_277816944.1 1669839..1670009(+) (comA) [Staphylococcus pseudintermedius strain Z0118SP0108]
MADPVVNLTKMPYREFKEEWTGVTILLKPTSLYKPIKQDKVRLTYFIPLLLKEKKD

Nucleotide


Download         Length: 171 bp        

>NTDB_id=479920 IAU63_RS13130 WP_277816944.1 1669839..1670009(+) (comA) [Staphylococcus pseudintermedius strain Z0118SP0108]
ATAGCTGACCCTGTTGTTAATTTAACAAAGATGCCTTATAGGGAATTTAAAGAAGAGTGGACTGGAGTTACAATCTTATT
AAAACCTACATCTTTATATAAGCCTATAAAGCAAGATAAAGTTCGTTTAACTTATTTTATACCTTTATTATTAAAAGAAA
AAAAAGATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

51.923

92.857

0.482
  comA Streptococcus pneumoniae D39

51.923

92.857

0.482
  comA Streptococcus pneumoniae R6

51.923

92.857

0.482
  comA Streptococcus pneumoniae TIGR4

51.923

92.857

0.482
  comA Streptococcus pneumoniae Rx1

51.923

92.857

0.482
  comA Streptococcus mitis NCTC 12261

51.923

92.857

0.482
  comA Streptococcus gordonii str. Challis substr. CH1

50

92.857

0.464
  comA/nlmT Streptococcus mutans UA159

46.154

92.857

0.429