Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   IBC03_RS06975 Genome accession   NZ_CP061025
Coordinates   1349182..1350675 (-) Length   497 a.a.
NCBI ID   WP_011227407.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 13496     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1344182..1355675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC03_RS06945 (IBC03_06960) - 1344312..1344689 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  IBC03_RS06950 (IBC03_06965) - 1344694..1345392 (+) 699 WP_014608540.1 ABC transporter ATP-binding protein -
  IBC03_RS06955 (IBC03_06970) - 1345404..1346189 (+) 786 WP_002951425.1 hypothetical protein -
  IBC03_RS06960 (IBC03_06975) amiF 1346239..1347168 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  IBC03_RS06965 (IBC03_06980) amiE 1347161..1348246 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  IBC03_RS06970 (IBC03_06985) amiD 1348256..1349182 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  IBC03_RS06975 (IBC03_06990) amiC 1349182..1350675 (-) 1494 WP_011227407.1 ABC transporter permease Regulator
  IBC03_RS06980 (IBC03_06995) - 1350737..1352706 (-) 1970 Protein_1333 peptide ABC transporter substrate-binding protein -
  IBC03_RS06985 (IBC03_07000) - 1353062..1354217 (+) 1156 Protein_1334 ISL3 family transposase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55721.59 Da        Isoelectric Point: 10.0618

>NTDB_id=479830 IBC03_RS06975 WP_011227407.1 1349182..1350675(-) (amiC) [Streptococcus thermophilus strain 13496]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTIFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=479830 IBC03_RS06975 WP_011227407.1 1349182..1350675(-) (amiC) [Streptococcus thermophilus strain 13496]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCGAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGCTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAATGG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACAATCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

99.799

100

0.998
  amiC Streptococcus thermophilus LMD-9

99.396

100

0.994
  amiC Streptococcus salivarius strain HSISS4

97.183

100

0.972