Detailed information NTG0479555

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: IBC04_RS08870
• Genome accession: NZ_CP061020
• Coordinates: 1713836..1714264 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 24740
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1708836..1719264

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBC04_RS08830 (IBC04_08850)	-	1708973..1709416 (-)	444	WP_011681680.1	hypothetical protein	-
IBC04_RS10350	-	1709490..1709828 (-)	339	WP_224103197.1	CPBP family intramembrane glutamic endopeptidase	-
IBC04_RS10355	-	1709872..1710147 (-)	276	WP_011681681.1	hypothetical protein	-
IBC04_RS08840 (IBC04_08860)	-	1710159..1710356 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
IBC04_RS08845 (IBC04_08865)	-	1710605..1711798 (-)	1194	WP_014608740.1	acetate kinase	-
IBC04_RS08850 (IBC04_08870)	comYH	1711854..1712810 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
IBC04_RS08855 (IBC04_08875)	comGG	1712855..1713172 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
IBC04_RS08860 (IBC04_08880)	comYF	1713150..1713587 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
IBC04_RS08865 (IBC04_08885)	comGE	1713571..1713864 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
IBC04_RS08870 (IBC04_08890)	comYD	1713836..1714264 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
IBC04_RS08875 (IBC04_08895)	comYC	1714224..1714550 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
IBC04_RS08880 (IBC04_08900)	comYB	1714547..1715647 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
IBC04_RS08885 (IBC04_08905)	comGA/cglA/cilD	1715529..1716470 (-)	942	WP_014608745.1	competence type IV pilus ATPase ComGA	Machinery gene
IBC04_RS08890 (IBC04_08910)	-	1716551..1716913 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=479555 IBC04_RS08870 WP_011226626.1 1713836..1714264(-) (comYD) [Streptococcus thermophilus strain 24740]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=479555 IBC04_RS08870 WP_011226626.1 1713836..1714264(-) (comYD) [Streptococcus thermophilus strain 24740]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38