Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   IAG34_RS16860 Genome accession   NZ_CP060994
Coordinates   3427550..3428290 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain CAb-65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3422550..3433290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAG34_RS16840 (IAG34_16835) aroB 3423092..3424174 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  IAG34_RS16845 (IAG34_16840) aroK 3424203..3424772 (-) 570 WP_000643712.1 shikimate kinase AroK -
  IAG34_RS16850 (IAG34_16845) pilQ 3424784..3426949 (-) 2166 WP_004742153.1 type IV pilus secretin PilQ family protein Machinery gene
  IAG34_RS16855 (IAG34_16850) pilP 3427012..3427539 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  IAG34_RS16860 (IAG34_16855) pilO 3427550..3428290 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  IAG34_RS16865 (IAG34_16860) pilN 3428287..3428928 (-) 642 WP_110989352.1 PilN domain-containing protein Machinery gene
  IAG34_RS16870 (IAG34_16865) pilM 3428928..3429986 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  IAG34_RS16875 (IAG34_16870) ponA 3430149..3432704 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=479374 IAG34_RS16860 WP_000076101.1 3427550..3428290(-) (pilO) [Acinetobacter baumannii strain CAb-65]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=479374 IAG34_RS16860 WP_000076101.1 3427550..3428290(-) (pilO) [Acinetobacter baumannii strain CAb-65]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAAAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGACGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683