Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IAG34_RS16855 Genome accession   NZ_CP060994
Coordinates   3427012..3427539 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain CAb-65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3422012..3432539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAG34_RS16835 (IAG34_16830) - 3422201..3423076 (-) 876 WP_004742154.1 hypothetical protein -
  IAG34_RS16840 (IAG34_16835) aroB 3423092..3424174 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  IAG34_RS16845 (IAG34_16840) aroK 3424203..3424772 (-) 570 WP_000643712.1 shikimate kinase AroK -
  IAG34_RS16850 (IAG34_16845) pilQ 3424784..3426949 (-) 2166 WP_004742153.1 type IV pilus secretin PilQ family protein Machinery gene
  IAG34_RS16855 (IAG34_16850) pilP 3427012..3427539 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  IAG34_RS16860 (IAG34_16855) pilO 3427550..3428290 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  IAG34_RS16865 (IAG34_16860) pilN 3428287..3428928 (-) 642 WP_110989352.1 PilN domain-containing protein Machinery gene
  IAG34_RS16870 (IAG34_16865) pilM 3428928..3429986 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=479373 IAG34_RS16855 WP_000695065.1 3427012..3427539(-) (pilP) [Acinetobacter baumannii strain CAb-65]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=479373 IAG34_RS16855 WP_000695065.1 3427012..3427539(-) (pilP) [Acinetobacter baumannii strain CAb-65]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCGCAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCTCTTGAAGCTTTAAATATGAAAGGGAGCATGCG
AAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714