Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IAG34_RS16865 Genome accession   NZ_CP060994
Coordinates   3428287..3428928 (-) Length   213 a.a.
NCBI ID   WP_110989352.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CAb-65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3423287..3433928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAG34_RS16845 (IAG34_16840) aroK 3424203..3424772 (-) 570 WP_000643712.1 shikimate kinase AroK -
  IAG34_RS16850 (IAG34_16845) pilQ 3424784..3426949 (-) 2166 WP_004742153.1 type IV pilus secretin PilQ family protein Machinery gene
  IAG34_RS16855 (IAG34_16850) pilP 3427012..3427539 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  IAG34_RS16860 (IAG34_16855) pilO 3427550..3428290 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  IAG34_RS16865 (IAG34_16860) pilN 3428287..3428928 (-) 642 WP_110989352.1 PilN domain-containing protein Machinery gene
  IAG34_RS16870 (IAG34_16865) pilM 3428928..3429986 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  IAG34_RS16875 (IAG34_16870) ponA 3430149..3432704 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  IAG34_RS16880 (IAG34_16875) - 3432688..3433545 (-) 858 WP_217408552.1 putative RNA methyltransferase -
  IAG34_RS16885 (IAG34_16880) - 3433548..3433880 (-) 333 WP_000169599.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24089.49 Da        Isoelectric Point: 5.3968

>NTDB_id=479375 IAG34_RS16865 WP_110989352.1 3428287..3428928(-) (pilN) [Acinetobacter baumannii strain CAb-65]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQTNQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDFAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=479375 IAG34_RS16865 WP_110989352.1 3428287..3428928(-) (pilN) [Acinetobacter baumannii strain CAb-65]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAACGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTTTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

98.122

100

0.981
  comN Acinetobacter baylyi ADP1

71.635

97.653

0.7