Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NMBG2136_RS04495 Genome accession   NC_017513
Coordinates   845297..845965 (+) Length   222 a.a.
NCBI ID   WP_041423517.1    Uniprot ID   -
Organism   Neisseria meningitidis G2136     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 840297..850965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBG2136_RS15510 - 841164..841271 (+) 108 Protein_833 IS5/IS1182 family transposase -
  NMBG2136_RS04475 (NMBG2136_0821) - 841316..841648 (+) 333 WP_002213854.1 hypothetical protein -
  NMBG2136_RS04480 (NMBG2136_0822) - 841979..842488 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NMBG2136_RS04485 (NMBG2136_0823) - 842986..843573 (-) 588 WP_002220670.1 superoxide dismutase -
  NMBG2136_RS04490 (NMBG2136_0824) dnaB 843736..845142 (+) 1407 WP_002213843.1 replicative DNA helicase -
  NMBG2136_RS04495 (NMBG2136_0825) pilH 845297..845965 (+) 669 WP_041423517.1 GspH/FimT family pseudopilin Machinery gene
  NMBG2136_RS04500 (NMBG2136_0826) pilV 845995..846606 (+) 612 WP_014580773.1 type IV pilus modification protein PilV Machinery gene
  NMBG2136_RS04505 (NMBG2136_0827) pilJ 846603..847550 (+) 948 WP_041423518.1 PilW family protein Machinery gene
  NMBG2136_RS04510 (NMBG2136_0828) pilK 847529..848125 (+) 597 WP_014580775.1 pilus assembly PilX family protein Machinery gene
  NMBG2136_RS04515 (NMBG2136_0829) pilX 848130..848603 (+) 474 WP_014580776.1 PilX family type IV pilin Machinery gene

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24881.49 Da        Isoelectric Point: 9.8843

>NTDB_id=47906 NMBG2136_RS04495 WP_041423517.1 845297..845965(+) (pilH) [Neisseria meningitidis G2136]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKGGTVN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTTDRVVWTFNQNGTFGYTK
DQHLTKQSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=47906 NMBG2136_RS04495 WP_041423517.1 845297..845965(+) (pilH) [Neisseria meningitidis G2136]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGGCGGTACGGTCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTTGGTCAGACTCAGCCGACCACCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTACAAAACAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

83.258

99.55

0.829

Multiple sequence alignment