Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JZM58_RS26835 Genome accession   NZ_CP071797
Coordinates   6024480..6024998 (-) Length   172 a.a.
NCBI ID   WP_003228709.1    Uniprot ID   A0AAQ2D7E0
Organism   Pseudomonas fluorescens strain YK-310     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6019480..6029998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM58_RS26805 (JZM58_26805) - 6019935..6020603 (+) 669 WP_007955624.1 YjfI family protein -
  JZM58_RS26810 (JZM58_26810) - 6020621..6021319 (+) 699 WP_103385518.1 PspA/IM30 family protein -
  JZM58_RS26815 (JZM58_26815) - 6021443..6022093 (+) 651 WP_207984100.1 DUF2491 family protein -
  JZM58_RS26820 (JZM58_26820) - 6022107..6022532 (+) 426 WP_207984101.1 DUF350 domain-containing protein -
  JZM58_RS26825 (JZM58_26825) - 6022550..6023242 (+) 693 WP_207984102.1 DUF1190 domain-containing protein -
  JZM58_RS26830 (JZM58_26830) - 6023245..6024402 (+) 1158 WP_207984103.1 glutathionylspermidine synthase family protein -
  JZM58_RS26835 (JZM58_26835) ssb 6024480..6024998 (-) 519 WP_003228709.1 single-stranded DNA-binding protein Machinery gene
  JZM58_RS26840 (JZM58_26840) - 6025008..6026405 (-) 1398 WP_007955631.1 MFS transporter -
  JZM58_RS26845 (JZM58_26845) uvrA 6026597..6029431 (+) 2835 WP_207984104.1 excinuclease ABC subunit UvrA Machinery gene
  JZM58_RS26850 (JZM58_26850) bfr 6029498..6029965 (-) 468 WP_007955633.1 bacterioferritin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19115.25 Da        Isoelectric Point: 5.9314

>NTDB_id=478936 JZM58_RS26835 WP_003228709.1 6024480..6024998(-) (ssb) [Pseudomonas fluorescens strain YK-310]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRSAPAPQQAAPQPA
PDFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=478936 JZM58_RS26835 WP_003228709.1 6024480..6024998(-) (ssb) [Pseudomonas fluorescens strain YK-310]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACTTGCGGCCAGGATCCCGAAGTACGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAAACCGAGT
GGCACCGTGTATCGATGTTCGGCAAGGTTGCCGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTTTACATCGAA
GGCAAGTTGCAGACCCGTGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTATCAGCAGCAGGCGCCACGCC
AACAGGCTCCGCGTCCGCAGCAGTCGGCACCTCAGCAGCGTTCGGCCCCGGCTCCACAGCAGGCCGCACCGCAACCGGCT
CCGGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAQ2D7E0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.242

100

0.616
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.506
  ssb Neisseria meningitidis MC58

47.222

100

0.494
  ssb Neisseria gonorrhoeae MS11

47.222

100

0.494