Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   JZM58_RS26845 Genome accession   NZ_CP071797
Coordinates   6026597..6029431 (+) Length   944 a.a.
NCBI ID   WP_207984104.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain YK-310     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6021597..6034431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM58_RS26820 (JZM58_26820) - 6022107..6022532 (+) 426 WP_207984101.1 DUF350 domain-containing protein -
  JZM58_RS26825 (JZM58_26825) - 6022550..6023242 (+) 693 WP_207984102.1 DUF1190 domain-containing protein -
  JZM58_RS26830 (JZM58_26830) - 6023245..6024402 (+) 1158 WP_207984103.1 glutathionylspermidine synthase family protein -
  JZM58_RS26835 (JZM58_26835) ssb 6024480..6024998 (-) 519 WP_003228709.1 single-stranded DNA-binding protein Machinery gene
  JZM58_RS26840 (JZM58_26840) - 6025008..6026405 (-) 1398 WP_007955631.1 MFS transporter -
  JZM58_RS26845 (JZM58_26845) uvrA 6026597..6029431 (+) 2835 WP_207984104.1 excinuclease ABC subunit UvrA Machinery gene
  JZM58_RS26850 (JZM58_26850) bfr 6029498..6029965 (-) 468 WP_007955633.1 bacterioferritin -
  JZM58_RS26855 (JZM58_26855) - 6030115..6031569 (-) 1455 WP_207984105.1 catalase -
  JZM58_RS26860 (JZM58_26860) rplQ 6031808..6032194 (-) 387 WP_007955635.1 50S ribosomal protein L17 -
  JZM58_RS26865 (JZM58_26865) rpoA 6032237..6033238 (-) 1002 WP_003186012.1 DNA-directed RNA polymerase subunit alpha -
  JZM58_RS26870 (JZM58_26870) rpsD 6033261..6033881 (-) 621 WP_003176404.1 30S ribosomal protein S4 -
  JZM58_RS26875 (JZM58_26875) rpsK 6033900..6034289 (-) 390 WP_002555466.1 30S ribosomal protein S11 -

Sequence

Protein


Download         Length: 944 a.a.        Molecular weight: 104318.23 Da        Isoelectric Point: 6.9551

>NTDB_id=478937 JZM58_RS26845 WP_207984104.1 6026597..6029431(+) (uvrA) [Pseudomonas fluorescens strain YK-310]
MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDIPLEAQTVSQMVDLVLAQPEGSKLMLLAPVIRERKG
EHLSVFEELRAQGFVRARVNGRLCELDELPKLDKQKKHTIEVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE
PGEEMIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLVNGELTLAEGAIRGWDRRNVYYFQML
GSLAAHYGFSLEQPFNELPADQQKYILHGSGSQNVDFKYLNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFL
STQSCPDCRGTRLRREARHVWVGEKTLPAVTNLPIGDACDYFGALKMTGRRGEIADKILKEIRERLQFLVNVGLDYLSLD
RSADTLSGGEAQRIRLASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIG
PGAGVHGGQIVAEGTPDEVMAHPDSLTGKYLSGRVKIEVPAKRTPRNKKQVLALKGARGNNLRNVDLEIPIGLLTCVTGV
SGSGKSTLINNTLFPLSATALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPES
RSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKYKGKSIHETLEMTIEEAREFFD
AVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDH
GNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIATGTPEEVAEMKQSHTGHYLKPLLIRDRA

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=478937 JZM58_RS26845 WP_207984104.1 6026597..6029431(+) (uvrA) [Pseudomonas fluorescens strain YK-310]
TTGGACAAGATCCTGATTCGTGGGGCCCGCACCCACAACCTGAAGAACATCGACCTGACCCTGCCACGGGACAAACTGAT
CGTCATCACCGGCCTGTCCGGATCCGGCAAGTCGTCCCTGGCCTTCGACACGCTGTACGCCGAAGGTCAGCGTCGCTATG
TCGAATCCCTGTCGGCCTATGCCCGGCAGTTCCTGTCGATGATGGAAAAACCCGACGTCGACACCATCGAAGGCCTGTCT
CCGGCGATCTCCATCGAACAGAAGTCGACCTCGCACAACCCGCGCTCCACGGTCGGCACCATCACCGAAATCTACGACTA
CCTGCGTCTGCTTTATGCACGCGTCGGTACGCCGCGCTGTCCGGATCACGACATTCCGCTGGAAGCGCAGACCGTCAGCC
AGATGGTCGACCTGGTGCTGGCCCAGCCGGAAGGCAGCAAGCTGATGTTGCTGGCGCCGGTGATTCGCGAACGCAAGGGC
GAGCACCTGTCGGTGTTCGAAGAACTGCGCGCCCAGGGCTTCGTCCGGGCCCGGGTCAACGGCCGGCTCTGCGAGCTGGA
CGAACTGCCGAAACTGGATAAGCAGAAGAAGCACACGATCGAAGTCGTGGTCGACCGCTTCAAAGTTCGCGCCGACCTGC
AGCAACGCCTGGCCGAGTCCTTCGAGACCGCGCTCAAACTGGCGGACGGCATCGCGCTGGTGGCGCCGATGGACGACGAG
CCAGGCGAAGAGATGATCTTCTCCGCGCGCTTCGCCTGCCCGATCTGCGGCCACGCGATCAGCGAGCTGGAACCCAAACT
GTTTTCCTTCAACAACCCGGCCGGTGCCTGCCCGACCTGTGACGGTCTGGGCGTGAAGCAGTTCTTTGACATCAAGCGAC
TGGTCAACGGTGAACTCACGCTGGCCGAAGGTGCGATACGCGGCTGGGACCGGCGCAACGTCTATTACTTCCAGATGCTC
GGCTCACTGGCCGCGCATTACGGGTTCAGCCTGGAGCAGCCGTTCAACGAGCTGCCGGCCGATCAGCAGAAGTACATCCT
GCACGGCAGCGGCTCGCAGAACGTAGATTTCAAATACCTCAATGACCGGGGCGACATCGTCAAACGCTCGCACCCGTTCG
AAGGCATCGTGCCGAACCTCGAGCGTCGCTACCGCGAAACCGAATCGGCGAGCGTGCGTGAAGAACTGGCGAAGTTCCTC
AGCACCCAGTCGTGCCCTGATTGCCGTGGCACCCGCCTGCGTCGCGAAGCGCGGCACGTGTGGGTCGGCGAGAAAACCCT
GCCGGCAGTGACCAACCTGCCGATCGGCGACGCCTGCGATTACTTCGGCGCGTTGAAGATGACCGGCCGTCGTGGCGAAA
TCGCCGACAAGATTCTCAAGGAGATTCGCGAGCGTCTGCAGTTTCTGGTCAACGTCGGTCTCGACTATCTGTCGCTGGAT
CGCAGTGCCGACACGTTGTCTGGCGGCGAGGCACAGCGGATTCGTCTGGCCAGCCAGATCGGCGCGGGCCTGGTGGGTGT
CCTGTACATTCTCGATGAACCGTCCATTGGTCTGCACCAGCGCGACAATGATCGCTTGCTCGGCACCCTCAAGCATCTGC
GCGACATCGGCAATACAGTGATCGTGGTCGAGCATGATGAAGACGCGATCCGTCTCGCTGACTACGTCGTGGATATCGGC
CCGGGCGCCGGCGTTCATGGCGGGCAGATCGTCGCCGAAGGCACGCCGGACGAAGTCATGGCGCACCCGGACTCGCTGAC
CGGTAAATACCTGTCGGGACGGGTCAAGATTGAAGTGCCGGCCAAACGTACACCGCGCAACAAGAAGCAGGTGCTGGCGC
TCAAGGGCGCGCGGGGCAACAACCTGCGCAACGTCGACCTGGAGATCCCGATCGGCTTGCTGACTTGCGTGACGGGTGTT
TCCGGCTCCGGCAAATCGACGCTGATCAACAACACGCTGTTCCCGCTGAGCGCCACGGCACTCAACGGTGCGACCACCCT
GGAAGCGGCAGCTCACGACAGCATCAAGGGCCTGGAGCATCTGGACAAGGTCGTCGACATCGACCAGAGCCCGATCGGCC
GTACGCCACGCTCCAACCCGGCGACCTATACCGGGCTGTTCACACCGATTCGCGAACTGTTCGCCGGCGTGCCCGAGTCC
CGCTCCCGTGGTTACGGCCCGGGGCGTTTCTCGTTCAACGTGAAGGGCGGTCGTTGCGAAGCCTGTCAGGGCGACGGTCT
GATCAAGGTGGAAATGCACTTCCTGCCGGACATCTACGTCCCGTGCGACGTGTGCAAGAGCAAGCGCTACAACCGCGAAA
CCCTGGAGATCAAGTACAAGGGCAAGAGCATCCACGAAACCCTCGAGATGACCATCGAGGAAGCGCGAGAGTTCTTCGAT
GCGGTCCCGGCGCTGGCGCGCAAGCTGCAAACGCTGATGGATGTGGGCCTGTCCTACATCAAGCTCGGACAGTCGGCGAC
CACGCTGTCCGGTGGTGAAGCACAGCGGGTCAAGTTGTCTCGCGAGCTGTCCAAACGCGATACCGGCAAGACTCTGTACA
TCCTCGACGAGCCGACCACCGGTCTGCACTTCGCGGATATCCAGCAACTGCTCGACGTACTGCATCGCCTGCGCGACCAC
GGCAACACCGTGGTGGTGATCGAGCACAACCTCGACGTGATCAAGACGGCCGACTGGCTGGTGGATCTCGGCCCCGAGGG
TGGTTCGAAAGGTGGGCAGATCATCGCCACCGGTACGCCGGAGGAAGTGGCCGAGATGAAACAGTCTCACACCGGCCATT
ACCTCAAGCCGCTGCTGATCCGCGATCGGGCCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-398)

UvrA interaction domain (UvrA_inter)

(130-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.766

99.576

0.575
  uvrA Streptococcus pneumoniae TIGR4

57.766

99.576

0.575
  uvrA Streptococcus pneumoniae D39

57.766

99.576

0.575